TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig631  |  | 1 to 5605                                           28   5.6  
Cf_Contig765  |  | 1 to 162644                                         28   9.6  
Cf_Contig153  |  | 1 to 16578                                          28   9.6  

>Cf_Contig631  |  | 1 to 5605
          Length = 5605

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 5    LTGLPSVGKSTFSKAFSKK 23
            + GLP+VGKSTF    SKK
Sbjct: 2608 IVGLPNVGKSTFFNVLSKK 2664


>Cf_Contig765  |  | 1 to 162644
          Length = 162644

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 1     MLIILTGLPSVGKSTF 16
             +LI+LTGLP  GKS+F
Sbjct: 55728 LLILLTGLPGAGKSSF 55775


>Cf_Contig153  |  | 1 to 16578
          Length = 16578

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 43   FPVWKESYEEFIRDSNNYLIKEALENKFS 71
            FPVWK   EE ++  N  ++ EA++ + +
Sbjct: 7547 FPVWKHPSEERLQAHNKKILSEAMKRRMA 7461


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,237,595
Number of Sequences: 1089
Number of extensions: 43698
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 44
length of query: 255
length of database: 12,349,441
effective HSP length: 99
effective length of query: 156
effective length of database: 12,241,630
effective search space: 1909694280
effective search space used: 1909694280
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)