TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850424|gb|ADNL01000179.1| Astrammina rara contig00189, who...    31   0.027
gi|330848102|gb|ADNL01002501.1| Astrammina rara contig02969, who...    22   9.7  
gi|330848697|gb|ADNL01001906.1| Astrammina rara contig02264, who...    22   9.7  

>gi|330850424|gb|ADNL01000179.1| Astrammina rara contig00189, whole
           genome shotgun sequence
          Length = 2213

 Score = 30.8 bits (68), Expect = 0.027
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = -2

Query: 41  ESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNY---YNSKRRDLMNIAKECDT- 96
           + F VW   +    R  N +L+   + N FS++     Y   YNSK  +++N  +  D  
Sbjct: 961 KGFRVWFMPHARDTRSGNAFLLVNRMTNGFSIVPTTITYRKKYNSKFYEVLNYNQPEDAA 782

Query: 97  --NYVTIY 102
             N++ IY
Sbjct: 781 P*NFLMIY 758


>gi|330848102|gb|ADNL01002501.1| Astrammina rara contig02969, whole
            genome shotgun sequence
          Length = 2042

 Score = 22.3 bits (46), Expect = 9.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 3    IILTGLPSVGKSTF 16
            I +TG+PS GKS F
Sbjct: 1028 ITVTGIPSSGKSDF 1069


>gi|330848697|gb|ADNL01001906.1| Astrammina rara contig02264,
          whole genome shotgun sequence
          Length = 174

 Score = 22.3 bits (46), Expect = 9.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 3  IILTGLPSVGKSTF 16
          I +TG+PS GKS F
Sbjct: 33 ITVTGIPSSGKSDF 74


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,948
Number of Sequences: 3231
Number of extensions: 2432
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 255
length of database: 483,365
effective HSP length: 72
effective length of query: 183
effective length of database: 250,733
effective search space: 45884139
effective search space used: 45884139
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)