TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325192267|emb|FR824449.1| Albugo laibachii Nc14, genomic cont...    30   1.7  
gi|325192515|emb|FR824478.1| Albugo laibachii Nc14, genomic cont...    30   1.7  
gi|325188145|emb|FR824209.1| Albugo laibachii Nc14, genomic cont...    30   2.2  
gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic cont...    29   2.9  
gi|325186688|emb|FR824161.1| Albugo laibachii Nc14, genomic cont...    29   2.9  
gi|325185244|emb|FR824123.1| Albugo laibachii Nc14, genomic cont...    28   4.9  
gi|325192305|emb|FR824453.1| Albugo laibachii Nc14, genomic cont...    28   4.9  
gi|325188576|emb|FR824226.1| Albugo laibachii Nc14, genomic cont...    28   6.4  
gi|325184809|emb|FR824113.1| Albugo laibachii Nc14, genomic cont...    28   8.3  

>gi|325192267|emb|FR824449.1| Albugo laibachii Nc14, genomic contig
            CONTIG_406_NC14_v4_20680_245
          Length = 20680

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 2    LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFP 44
            +++L+G   VGKST +  F+  +AEK     +L  D+   S P
Sbjct: 4762 ILVLSGKGGVGKSTIACQFAFSLAEKGFQVGLLDIDITGPSVP 4890


>gi|325192515|emb|FR824478.1| Albugo laibachii Nc14, genomic contig
            CONTIG_435_NC14_v4_17994_228
          Length = 17994

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 111  LKRNIERGQKIPNEVIKNMY--EKFDTPGTKYAWDLPDIT 148
            ++R  E G+  PN  +   Y   + DT   K+ W LPD T
Sbjct: 4232 VRRKWELGETFPNAQVMEAYLHPQVDTCSKKFQWSLPDFT 4113


>gi|325188145|emb|FR824209.1| Albugo laibachii Nc14, genomic contig
             CONTIG_164_NC14_v4_56461_235
          Length = 56461

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
 Frame = +3

Query: 2     LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVW-----------KESY 50
             +IIL G+P  GKST ++  S+ + + +    I   DL  E    +           ++ +
Sbjct: 28368 IIILRGIPGSGKSTVARQLSRILPQIHWKVSICSADLYFEGRRGYRFDRNKLGIAHRQCF 28547

Query: 51    EEFIRDSNNYLIKEALENKFSVIVDDTN 78
               F R+    L  E  +++  ++VD+TN
Sbjct: 28548 HTFKREIRACLDPENRDSQRVIVVDNTN 28631


>gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic contig
              CONTIG_3_NC14_v4_366484_228
          Length = 366484

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 6      TGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIR 40
              TGLP  GKST  KA  + + +K    I L  D +R
Sbjct: 346272 TGLPGSGKSTIGKALERLLLQKRAHVIQLDGDNLR 346376


>gi|325186688|emb|FR824161.1| Albugo laibachii Nc14, genomic contig
             CONTIG_116_NC14_v4_73775_212
          Length = 73775

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 6     TGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIR 40
             TGLP  GKST  KA  + + +K    I L  D +R
Sbjct: 11286 TGLPGSGKSTIGKALERLLLQKRAHVIQLDGDNLR 11390


>gi|325185244|emb|FR824123.1| Albugo laibachii Nc14, genomic contig
             CONTIG_78_NC14_v4_93761_227
          Length = 93761

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 12    GKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESY 50
             G +TF    +K+MA      I++ T L+R   P WKES+
Sbjct: 83443 GFTTF*GNKTKRMA*FTKSAIVITTSLVRLKLPSWKESW 83327


>gi|325192305|emb|FR824453.1| Albugo laibachii Nc14, genomic contig
            CONTIG_410_NC14_v4_20313_146
          Length = 20313

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 12   GKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESY 50
            G +TF    +K+MA      I++ T L+R   P WKES+
Sbjct: 8030 GFTTF*GNKTKRMA*FTKSAIVITTSLVRLKLPSWKESW 7914


>gi|325188576|emb|FR824226.1| Albugo laibachii Nc14, genomic contig
             CONTIG_181_NC14_v4_52393_232
          Length = 52393

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 26/147 (17%)
 Frame = -3

Query: 1     MLIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNY 60
             +++++ GLP+ GKS  +K   K +  K     +     +R S    ++ +  F  D +N 
Sbjct: 17678 LVLVMVGLPARGKSFIAKKLWKFLCWKGFRCKVFNVGQVRRSHCTDEQDHRFF--DPHNE 17505

Query: 61    LIKEALE-----------------NKFS-----VIVDDTNYYNSKRRDLM----NIAKEC 94
               KEA E                 ++F+      I D TN    +RR LM    + AK+ 
Sbjct: 17504 KGKEAREQLAMQVLEQVKMWFLSDSEFNKCGDVAIFDATNTTKQRRRMLMDSMDDFAKKH 17325

Query: 95    DTNYVTIYLKAPLNLLLKRNIERGQKI 121
             D     +Y+++        N    QKI
Sbjct: 17324 DFFVYMVYIESICTKEAVINANIAQKI 17244


>gi|325184809|emb|FR824113.1| Albugo laibachii Nc14, genomic contig
             CONTIG_68_NC14_v4_98267_226
          Length = 98267

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
 Frame = -1

Query: 41    ESFPVWKESYEEFIRDSNNYLIKEALENKFSVIV----------DDTNYYNSKRRDLMNI 90
             E  P  +  + E +    N + +E  E   S +V           D N +N+    +M+ 
Sbjct: 71459 EDDPKKRPEFAELLSRLQNDVQQEIQEEASSSVVKRRAMLRNQRQDHNSHNTGNHQIMSS 71280

Query: 91    A---------KECDTNYVTIYLKAPLNLLLKRNIERGQKIPNEVIKNMYEKFDTPGTKY 140
                       + C TN +  Y   PLN++ + N+    +     IK+  + +  PG  Y
Sbjct: 71279 VSIPTESTNKETCHTNDILEYANVPLNVIDRENVPNAME-----IKHKRKTYHDPGHLY 71118


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,148,835
Number of Sequences: 3816
Number of extensions: 62228
Number of successful extensions: 260
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 196
length of query: 255
length of database: 10,913,379
effective HSP length: 98
effective length of query: 157
effective length of database: 10,539,411
effective search space: 1654687527
effective search space used: 1654687527
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)