TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value T.congo.pschr4 279 3e-75 TcIL3000_10_v2.embl 79 5e-15 T.congo.pschr.11 59 6e-09 T.congo.pschr2 44 2e-04 T.congo.pschr.8 37 0.030 T.congo.pschr.3. 37 0.040 T.congo.pschr.9 32 0.98 >T.congo.pschr4 Length = 1343510 Score = 279 bits (714), Expect = 3e-75 Identities = 196/599 (32%), Positives = 284/599 (47%), Gaps = 81/599 (13%) Frame = -3 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 LGH+DSGK FDK P+S+ RGITLDLGFS V + + Sbjct: 360048 LGHVDSGKTSLAKALSLTASTAAFDKSPESQRRGITLDLGFSATCVSTESAAPA------ 359887 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLV 132 Q T VDCPGHASLIRT++GGAQIID+++LVID KG+QTQ+AEC+V Sbjct: 359886 -----LFALGLKHVQCTFVDCPGHASLIRTVLGGAQIIDVIILVIDACKGVQTQTAECIV 359722 Query: 133 IGQIACQKLVVVLNKIDL---LPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXX 189 IG++ + LVVV+NKID L + +++A +DK+ ++++KT E T++ ++ V Sbjct: 359721 IGEVLNKPLVVVINKIDAVQGLTQAEQRANLDKLRRRLRKTFERTRWPHVSMVEVSAAPR 359542 Query: 190 XXXXXXXXXXXX----------IPELIELLTSQISIPTRDPSG---PFLMSVDHCFSIKG 236 +P + L+ + RD +M VDHCF++KG Sbjct: 359541 GGSAEGDAAVGGHCVPINVDGVLPAALRLVDVEAMKRQRDAQHRPEDLVMMVDHCFALKG 359362 Query: 237 QGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPK 296 QGTV TGTIL G +S+GDS+ IP +VVKKVK +Q+F P+ A QGDR+G+ V QFD Sbjct: 359361 QGTVFTGTILRGKVSVGDSILIPESQVVKKVKGLQVFRKPVQCAGQGDRVGLSVVQFDAD 359182 Query: 297 LLERGLVCAPESLH-----------------TVHAALISVEKIPYFRGPLQTKAKFHITV 339 +ERGL+C+ H +V + V ++ + + KFHIT+ Sbjct: 359181 GMERGLLCSAVQQHHQRHRSSQQGATSSAFESVSTLIAEVSRVRFHQLACTIHTKFHITI 359002 Query: 340 GHETVMGRLMFFSPA-------PDNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDND 392 GH TVMG + FFS F+ +QE + E + + Sbjct: 359001 GHSTVMGSMRFFSRPTVTEAGHAGEVADPAAAQPFDLTQESEYVESLGEEAYLTFEAPVE 358822 Query: 393 EADKKAG-QATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILL 451 E ++AG + P +A+V EKPV +I +RLD + N CR+A G + Sbjct: 358821 ELKREAGAPVAVKYGPLTYFAIVLLEKPVMAAVGTPLIATRLDVE-QDNMCRIAIAGSVR 358645 Query: 452 HGLEDRNYADSFLPRLKVYKLKHKHGLVERAMDDYSVIGRSLFKKE-------------- 497 L D + L + + K + +VER + D S I + E Sbjct: 358644 ALLHDEKADGASWRSLPIIRYKTRTLVVERVVSDRSCIASGVVTVEKHEGGTGGDTSSST 358465 Query: 498 ----------------TNIQLFVGLKVH----------LSTGELGIIDSAFGQSGKFKI 530 +Q F+GL+VH L+ + G IDSAFG++GK K+ Sbjct: 358464 KKRKDNSGTKDKDTLHAEVQKFIGLRVHFRPTGGECGSLTPLKEGTIDSAFGKTGKVKL 358288 Score = 33.1 bits (74), Expect = 0.44 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +1 Query: 220 PSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLG 253 P+ F + +D CF ++G G V+ G + GSI LG Sbjct: 471580 PNSKFEVLLDSCFYVQGVGPVVKGHVSKGSIELG 471681 >TcIL3000_10_v2.embl Length = 3612457 Score = 79.3 bits (194), Expect = 5e-15 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 12/225 (5%) Frame = -1 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVI-GQIACQKLVVVLNKID 149 +DCPGH ++ +I GA +D +LV+ G Q+ E L+I QI LV +NK D Sbjct: 2929249 IDCPGHMDFVKNMITGAAQMDGGILVVAANDGCMPQTREHLLICSQIGLPALVGFINKCD 2929070 Query: 150 LLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELL 209 ++ ++ I+ + ++++ LE KF V I ELI Sbjct: 2929069 MMQ--GQEDMIELVEMELRELLEKYKFPAEETPLVRGSAVKALEGDADSEAKIMELIAKC 2928896 Query: 210 TSQISIPTRDPSGPFLMSVDHCFSI--KGQGTVMTGTILSGSISLGDSVEI---PALKVV 264 I P R PFLM ++H + I + ++TG + G + + E+ A K+ Sbjct: 2928895 DEWIPDPPRATEKPFLMPIEHVYEIGKDKKSVIVTGRVDQGLMKINADAELSGFSAKKLS 2928716 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICV------TQFDPKLLERGLV 303 KV ++M+H + M GD +G + T +ERG+V Sbjct: 2928715 VKVTGIEMYHKTLDECMPGDSVGASIVGTGDTTSLSKDNVERGMV 2928581 Score = 78.2 bits (191), Expect = 1e-14 Identities = 68/281 (24%), Positives = 109/281 (38%), Gaps = 13/281 (4%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F P T++D PGH Sbjct: 464305 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 464409 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +L+I ++K QT+ L+ + +++VV NK Sbjct: 464410 RDFIKNMITGTSQADAAILIIASAQGEFEAGISKDGQTRE-HALLAFTLGVKQMVVCCNK 464586 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXI--P 203 +D Q D++ K++ ++ + + +P+ P Sbjct: 464587 MDDKTVNYGQERYDEIVKEVSAYIKKVGYNVEKVRFVPISGWQGDNMIDKSDKMPWYKGP 464766 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 L+E L + P R P + + + I G GTV G + +G + GD V V Sbjct: 464767 TLLEAL-DMLEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDVVTFAPANV 464943 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVC 304 +VKS++M H + A GD +G V K + RG VC Sbjct: 464944 TTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVC 465066 Score = 73.6 bits (179), Expect = 3e-13 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 13/229 (5%) Frame = +2 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQ 139 T++D PGH I+ +I G D +L+I ++K QT+ L+ + + Sbjct: 461996 TIIDAPGHRDFIKNMITGTSQADAAILIIASAQGEFEAGISKDGQTRE-HALLAFTLGVK 462172 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXX 197 ++VV NK+D Q D++ K++ ++ + + +P+ Sbjct: 462173 QMVVCCNKMDDKTVNYGQERYDEIVKEVSAYIKKVGYNVEKVRFVPISGWQGDNMIDKSD 462352 Query: 198 XXXXI--PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDS 255 P L+E L + P R P + + + I G GTV G + +G + GD Sbjct: 462353 KMPWYKGPTLLEAL-DMLEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDV 462529 Query: 256 VEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVC 304 V V +VKS++M H + A GD +G V K + RG VC Sbjct: 462530 VTFAPANVTTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVC 462676 Score = 33.9 bits (76), Expect = 0.26 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L + VV +NK Sbjct: 1011017 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERIRPVVFINK 1010838 Query: 148 ID 149 +D Sbjct: 1010837 VD 1010832 Score = 33.9 bits (76), Expect = 0.26 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L + VV +NK Sbjct: 1008870 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERIRPVVFINK 1008691 Query: 148 ID 149 +D Sbjct: 1008690 VD 1008685 Score = 29.6 bits (65), Expect = 4.8 Identities = 24/85 (28%), Positives = 37/85 (43%) Frame = -2 Query: 226 MSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDR 285 +SVD + IK G G SGS S+ + + + K VK + + H + +GD Sbjct: 41487 ISVDEAY-IKFVGLADNGLASSGSHSV*NDTSVLPVLHEKHVKVLNIVHREVLETRRGDV 41311 Query: 286 LGICVTQFDPKLLERGLVCAPESLH 310 L VT L+ GL+ + H Sbjct: 41310 LRFAVTSV--TLVRHGLLSLVAAAH 41242 >T.congo.pschr.11 Length = 4797796 Score = 59.3 bits (142), Expect = 6e-09 Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 19/231 (8%) Frame = -1 Query: 47 ITLDLGFS------CFSVPLPARLRS--SXXXXXXXXXXXXXXXXXXXQVTLVDCPGHAS 98 IT+ LG++ C S PLP + S + VDCPGH Sbjct: 3748597 ITIHLGYANAKVFLCGSCPLPDAYHAFPSSQPDNTNCPTCRAPLTLKRHFSFVDCPGHDV 3748418 Query: 99 LIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVLNKIDLLPEGKR 156 L+ T++ GA I+D +L+I + Q Q+ E L +I + L+++ NKIDL+ E Sbjct: 3748417 LMATMLNGAAIMDAALLLIAANEPFPQPQTLEHLKAVEIMKLRNLIILQNKIDLVGEVHA 3748238 Query: 157 QAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELLTSQISIP 216 Q K++ +++T APIIP+ + L+E L ++ +P Sbjct: 3748237 Q----DQYHKIRNYIDSTIGLSAPIIPI----------SAQLKRNVDYLLEYL-CRMPLP 3748103 Query: 217 TRDPSGPFLMSVDHCFSIKG---------QGTVMTGTILSGSISLGDSVEI 258 TR P M+V F I +G V GT+ G + + VEI Sbjct: 3748102 TRQLKCPARMTVVRSFDINKPGEVDIENLRGGVAGGTVTQGVLRVNQIVEI 3747950 Score = 43.9 bits (102), Expect = 2e-04 Identities = 50/246 (20%), Positives = 102/246 (41%), Gaps = 20/246 (8%) Frame = -1 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVID---------VTKGMQTQSAECLVIGQIA 137 ++T++D PGH + + ++IGGA D+ +LVI KG QT+ +++ Sbjct: 1805437 RITVLDAPGHKAFVPSMIGGATQADVCVLVISSRTGEFETGFEKGGQTRE-HAMLVRTCG 1805261 Query: 138 CQKLVVVLNKIDLLPEGKRQAAIDKMTKKM-----QKTLENTKFRGAPIIPVXXXXXXXX 192 ++++ V+NK+D + G + D + ++ Q + K + IP+ Sbjct: 1805260 VKQMICVINKMDEV--GWSKDRYDTILGRLKPFLRQNGYDEEKAKNLIFIPIAGLTGDNL 1805087 Query: 193 XXXXXXXXXI---PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMT-GTILSG 248 P +++ + + T+ + ++ + + K +G V G + SG Sbjct: 1805086 IRKAEAVCPWYTGPTMMDFIDDLVLPETKSETD--ILCIPLVGAYKDEGRVFVYGKVESG 1804913 Query: 249 SISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVC--AP 306 S ++G+ ++I K V+ + + GD + + V D + G V P Sbjct: 1804912 SAAVGEKIQILPTKQEAIVEGISIEATEFEKCYPGDNVHLRVRGVDESDVHSGYVATSVP 1804733 Query: 307 ESLHTV 312 SL V Sbjct: 1804732 TSLRAV 1804715 Score = 31.6 bits (70), Expect = 1.3 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + +++D ++ + D + G+Q QS L + ++ LNK Sbjct: 2563088 IHLIDTPGHVDFTVELERAMRVVDGVVALFDASAGVQAQSYTVLQQSKKFDVPVIGFLNK 2563267 Query: 148 ID 149 +D Sbjct: 2563268 MD 2563273 >T.congo.pschr2 Length = 799489 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Frame = -1 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LVID+ G++ Q+ E + + + ++ LNK+D Sbjct: 353008 VIDTPGHESFTNLRSRGSSLCDIAILVIDIMHGLEPQTRESIRLLRERRCPFIIALNKVD 352829 Query: 150 LLPEGKRQAAID-KMTKKMQK 169 L + + +D + T MQK Sbjct: 352828 RLYDWEAHKDMDIERTLSMQK 352766 >T.congo.pschr.8 Length = 2451971 Score = 37.0 bits (84), Expect = 0.030 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 +T +D PG I D ++++ G+++Q+ E + + + +VVV+NK Sbjct: 1919120 ITFIDTPGERLFTEARFHALNIADFAVVIVSAIDGVRSQTYEAIKVALNVDKPIVVVINK 1918941 Query: 148 IDL 150 +DL Sbjct: 1918940 MDL 1918932 >T.congo.pschr.3. Length = 1451265 Score = 36.6 bits (83), Expect = 0.040 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + LVD PGH + ++ D ++++DV G+ QS L + +VLNK Sbjct: 432406 LNLVDSPGHIDFSCEVSTAMRLCDGAVVIVDVVDGVTQQSGGILRHAYREGLSMCLVLNK 432227 Query: 148 IDLL 151 +DLL Sbjct: 432226 VDLL 432215 >T.congo.pschr.9 Length = 2092392 Score = 32.0 bits (71), Expect = 0.98 Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Frame = -3 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVI-----DVTKGMQTQSAECLVIGQI-ACQKLVV 143 ++D PGH + + A D +LV+ + G+ + + LV+ +I LVV Sbjct: 1346089 VLDAPGHRDYVLNMTSSATQADAALLVVTAAFSEFEVGLAHGTKDHLVVLKILGIGHLVV 1345910 Query: 144 VLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPII 182 +NK+D + G Q D + ++++ L+ +F+ ++ Sbjct: 1345909 AVNKMDTV--GYSQERYDTVVRELKLLLKQFRFKDDAVV 1345799 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = -1 Query: 540 SKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQS 595 SKK + +K A AG G EESAER + S + L +FD + ++ +S Sbjct: 287526 SKKKIAGRVKGMADAGAGAGGCVEESAERVKKSDECMTLLVSSLELFDHYSKLNRS 287359 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,583,875 Number of Sequences: 11 Number of extensions: 196414 Number of successful extensions: 778 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 509 Number of HSP's gapped (non-prelim): 512 length of query: 596 length of database: 7,429,315 effective HSP length: 103 effective length of query: 493 effective length of database: 7,428,182 effective search space: 3662093726 effective search space used: 3662093726 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (28.5 bits)