TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.106 of Sphaeroforma arctica JP610 96 2e-19 supercont1.2498 of Sphaeroforma arctica JP610 64 1e-09 supercont1.126 of Sphaeroforma arctica JP610 56 2e-07 supercont1.13 of Sphaeroforma arctica JP610 36 0.34 supercont1.114 of Sphaeroforma arctica JP610 34 1.0 supercont1.61 of Sphaeroforma arctica JP610 34 1.3 supercont1.1163 of Sphaeroforma arctica JP610 32 6.5 supercont1.7569 of Sphaeroforma arctica JP610 31 8.5 >supercont1.106 of Sphaeroforma arctica JP610 Length = 154368 Score = 96.3 bits (238), Expect = 2e-19 Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 36/113 (31%) Frame = -2 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE----------------- 129 Q TLVDCPGHASLI+TIIGGAQIID+M+LV+D+ KG+Q Q+AE Sbjct: 132842 QFTLVDCPGHASLIKTIIGGAQIIDVMLLVVDINKGIQAQTAEVLSYISFISIL*DPPCA 132663 Query: 130 -------------------CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKM 163 C+V+G+I C ++VVVLNKIDL+PE +R I K+ Sbjct: 132662 VSLFIGL*LGLISTVLPLQCIVVGEITCDRMVVVLNKIDLVPEEERAKKIAKV 132504 Score = 83.2 bits (204), Expect = 2e-15 Identities = 40/62 (64%), Positives = 47/62 (75%) Frame = -1 Query: 243 GTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGL 302 GT+LSGS+ GD+VEIP+LK+ KKVKS+QMF P+ Q DR I VTQFD KLLERG Sbjct: 131733 GTVLSGSVKAGDTVEIPSLKIKKKVKSLQMFRQPVDGLAQSDRGAILVTQFDAKLLERG* 131554 Query: 303 VC 304 VC Sbjct: 131553 VC 131548 Score = 77.4 bits (189), Expect = 1e-13 Identities = 63/223 (28%), Positives = 81/223 (36%), Gaps = 99/223 (44%) Frame = -3 Query: 407 PRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNYADSFLPR 466 P + L+ +P+ CP L I SRLDADI++ RLAFHG + + Y LPR Sbjct: 130945 PADIYVLLNLAQPLLCPPDSLYIASRLDADINSKAVRLAFHGRISSLMASPKYKADTLPR 130766 Query: 467 LKVYKLKHKHGLVERA-------------------------------------------- 482 L +YK K + G V+R Sbjct: 130765 LLIYKRKFREGTVDRVRAIASRFILF*LNSISFS*CRGFCSYTVHFAAPYVAQIVI*ISD 130586 Query: 483 ------MDDYSVIGRSLFKKETNIQLFVGLKVHLST------------------------ 512 ++ S+IGR LFKKETNI++F G+KV LST Sbjct: 130585 RAFPQIVNANSLIGRGLFKKETNIKIFTGMKVTLSTGMHINN*SCVACFSLFYLQSLS*L 130406 Query: 513 -------------------------GELGIIDSAFGQSGKFKI 530 GE G ID AFGQSGKF + Sbjct: 130405 FDNIIQRQ*TPNSTIDNFITSDLI*GENGFIDGAFGQSGKFSV 130277 Score = 51.2 bits (121), Expect = 8e-06 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = -1 Query: 304 CAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPI 363 C S+ T +A + + ++ ++ L++ KFH++VGH+TVM FF D E Sbjct: 131355 CTEGSIPTAYAMICTANRVRIYKPELKSGTKFHVSVGHQTVMAEAQFFGIVDDGGTDEGS 131176 Query: 364 LDSFNFSQEYLFQEQY 379 F F ++Y+ Y Sbjct: 131175 SGDFTFDRDYIHLANY 131128 Score = 50.1 bits (118), Expect = 2e-05 Identities = 25/52 (48%), Positives = 29/52 (55%) Frame = -1 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARL 64 LGH+DSGK FD PQS+ RGITLDLGFS F P++L Sbjct: 137355 LGHVDSGKTSLCKVLSTVASTASFDNNPQSQARGITLDLGFSSFKRKTPSQL 137200 Score = 42.4 bits (98), Expect = 0.004 Identities = 20/44 (45%), Positives = 27/44 (61%) Frame = -3 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILS 247 E ++ L +S R + FL ++DHCF IKGQGTV+TG S Sbjct: 132016 ESLQGLEESLSDLKRPQAAHFLFAIDHCFFIKGQGTVLTGVFSS 131885 Score = 34.3 bits (77), Expect = 1.0 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = -1 Query: 530 IHIPGGLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTH 589 + IPGGLS ++ L KK+ +A ++ E++ V ++L+FK+Y +D Sbjct: 130119 VQIPGGLSEDTLNNLGNKGKKKG----SDAVKKNENSP-------VTINLSFKKYTYDAS 129973 Query: 590 KRMVQ 594 RMVQ Sbjct: 129972 GRMVQ 129958 >supercont1.2498 of Sphaeroforma arctica JP610 Length = 6230 Score = 63.9 bits (154), Expect = 1e-09 Identities = 65/307 (21%), Positives = 119/307 (38%), Gaps = 43/307 (14%) Frame = -3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D+Q RERG+T+ F P T++D PGH Sbjct: 2940 DRQKDERERGVTIACTTKEFFTPTK-------------------------HYTVIDAPGH 2836 Query: 97 ASLIRTIIGGAQIIDLMMLVID--------VTKG------MQTQSAE-CLVIGQIACQKL 141 I+ +I GA D+ +L++ + KG +Q Q+ + L+I + ++L Sbjct: 2835 RDFIKNMITGASQADVALLMVPSDGNFSAAIAKGNHKAGEVQGQTRQHALLINLLGVKQL 2656 Query: 142 VVVLNKIDLLPEGKRQAAIDKMTKKMQKTL---------ENTKFRGAPIIPVXXXXXXXX 192 +V +NK+D + I++ T+ + + ++ + PI+P+ Sbjct: 2655 IVGVNKMDC---DVAKYGIERYTEIKDEVVHMLTRVGWKKDFVAKSVPIMPISGWCGDNL 2485 Query: 193 XXXXXXXXX--------------IPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQG 238 + L++ L ++IP R P M + F IKG G Sbjct: 2484 ITKSNNMDWWKGADVLVGKEKVHVDCLLDCLEFMVTIPVRTPDLTMRMPLSGAFKIKGVG 2305 Query: 239 TVMTGTILSGSISLGDS-----VEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQF 293 V+TG + G++ GD P+ KV +++M H + +A GD +G+ + Sbjct: 2304 DVLTGRVEQGTVRPGDECVFLPTHTPSTGCTGKVFTVEMHHKQVEAAYAGDNVGLNIKGL 2125 Query: 294 DPKLLER 300 + K + R Sbjct: 2124 NAKNMPR 2104 >supercont1.126 of Sphaeroforma arctica JP610 Length = 142854 Score = 56.2 bits (134), Expect = 2e-07 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Frame = -2 Query: 135 QIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVXXXXXXXX 192 Q+ KLVV +NK D++ + + ++ + +M++TL + G PI+ Sbjct: 102857 QVGVDKLVVFINKADIVDD---EEMLELVEMEMRETLTEYGYDGDNTPIVRGSALCALEG 102687 Query: 193 XXXXXXXXXIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISL 252 I EL+ + I P RD PFLM V+ FSI G+GTV+TG I G + + Sbjct: 102686 REDKMGKDAIMELMAAVDEWIPTPVRDLDKPFLMPVEDVFSIAGRGTVVTGRIERGKVCM 102507 Score = 37.4 bits (85), Expect = 0.12 Identities = 16/45 (35%), Positives = 28/45 (62%) Frame = -1 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQ 135 +DCPGHA ++ +I GA +D ++V+ T G Q+ E L++ + Sbjct: 103884 IDCPGHADYVKNMITGAAQMDGGIMVVAGTDGQMPQTREHLLLSK 103750 >supercont1.13 of Sphaeroforma arctica JP610 Length = 257742 Score = 35.8 bits (81), Expect = 0.34 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI 117 V+ VDCPGH L+ T++ GA ++D +L+I Sbjct: 187620 VSFVDCPGHDILMATMLNGAAVMDAALLLI 187709 >supercont1.114 of Sphaeroforma arctica JP610 Length = 152309 Score = 34.3 bits (77), Expect = 1.0 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG 122 T++D PGH S + +I GA D+ +LV+ KG Sbjct: 64248 TVLDAPGHKSFVPNMISGAAQADIAILVVSARKG 64147 >supercont1.61 of Sphaeroforma arctica JP610 Length = 181012 Score = 33.9 bits (76), Expect = 1.3 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D G+ Q+ L K ++++NK Sbjct: 9120 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAITERIKPILMMNK 8941 Query: 148 ID--LLPEGKRQAAIDKMTKKMQKTLEN 173 +D LL + Q + M + Q+ +EN Sbjct: 8940 MDRALL---ELQLEPEDMYQTFQRIIEN 8866 >supercont1.1163 of Sphaeroforma arctica JP610 Length = 21007 Score = 31.6 bits (70), Expect = 6.5 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = +2 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 +VD PGH + ++D ++LV+D T+G Q+ L + +VV+NK+ Sbjct: 11450 IVDTPGHQDFGGEVERVLSMVDGVLLVVDATEGPMAQTKFVLSKALQNNLRPLVVINKV* 11629 Query: 150 LLP 152 + P Sbjct: 11630 ICP 11638 >supercont1.7569 of Sphaeroforma arctica JP610 Length = 1399 Score = 31.2 bits (69), Expect = 8.5 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVL 145 + L+D PGH + ++ D ++++DV++G+ Q V G C ++ L Sbjct: 177 INLIDSPGHVDFSSEVSTAVRLCDGALVIVDVSEGVCAQ-----VCGWATCSIMITAL 335 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,660,034 Number of Sequences: 15618 Number of extensions: 1082472 Number of successful extensions: 3697 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 730 Number of HSP's successfully gapped in prelim test: 146 Number of HSP's that attempted gapping in prelim test: 2637 Number of HSP's gapped (non-prelim): 1699 length of query: 596 length of database: 40,529,447 effective HSP length: 115 effective length of query: 481 effective length of database: 38,733,377 effective search space: 18630754337 effective search space used: 18630754337 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 68 (30.8 bits)