TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: P.polycephalum/genome.fa 297,657 sequences; 319,018,052 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Contig19809 1437 2007 59 7e-08 Contig12363 2234 2234 59 9e-08 Contig14005 2832 2842 54 2e-06 Contig604 29324 51689 52 6e-06 Contig68270 200 200 49 5e-05 Contig4246 8897 9149 48 2e-04 Contig8472 3981 5847 42 0.011 Contig195235 164 164 39 0.056 Contig6188 7064 14978 38 0.16 Contig3771 9035 31092 37 0.28 Contig221310 113 113 36 0.62 Contig13961 1573 1573 35 1.4 Contig1144 16662 24490 34 1.8 Contig198746 596 596 33 3.1 Contig83503 456 456 33 3.1 >Contig19809 1437 2007 Length = 2007 Score = 58.9 bits (141), Expect = 7e-08 Identities = 25/46 (54%), Positives = 32/46 (69%) Frame = -1 Query: 206 IELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251 + +L +++ P R GP L DHCF IKGQGTV+TGT+L GSIS Sbjct: 1917 VAILAQKVAQPQRSGEGPLLFEFDHCFPIKGQGTVLTGTVLKGSIS 1780 >Contig12363 2234 2234 Length = 2234 Score = 58.5 bits (140), Expect = 9e-08 Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 13/250 (5%) Frame = -1 Query: 119 VTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRG 178 + K QT+ L+ + ++++V +NK+D QA D++ K+ ++ + Sbjct: 989 IAKTGQTRE-HALLAYTLGVKQMIVAINKMDEKSVNWSQARYDEIVKETSSFVKKIGYNP 813 Query: 179 API--IPVXXXXXXXXXXXXXXXXXI--PELIELLTSQISIPTRDPSGPFLMSVDHCFSI 234 I +P+ P L+E L QI+ P R P + + + I Sbjct: 812 EKIAFVPISGWNGDNMLEKSANLPWYKGPTLLEAL-DQITEPKRPTDKPLRVPLQDVYKI 636 Query: 235 KGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFD 294 G GTV G + +G + G V + +VKS++M H+ + A+ GD +G V Sbjct: 635 GGIGTVPVGRVETGILKPGMIVTFAPANLSTEVKSVEMHHVALPEAVPGDNVGFNVKNLS 456 Query: 295 PKLLERGLVCA------PESLHTVHAALISVE---KIPYFRGPLQTKAKFHITVGHETVM 345 K + RG+V P + +A +I + I P+ HI ++ Sbjct: 455 VKDIRRGMVAGDSKNSPPAETESFNAQVIILNHPGTIHAGYAPVLDCHTAHIACKFTEIL 276 Query: 346 GRLMFFSPAP 355 + +F SPAP Sbjct: 275 SK-VFISPAP 249 >Contig14005 2832 2842 Length = 2842 Score = 54.3 bits (129), Expect = 2e-06 Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 2/67 (2%) Frame = -2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV-TKGMQTQSAECLVIGQI-ACQKLVVVL 145 ++ VDCPGH L+RT++ GA ++D +LV+ K Q Q+AE LV+ +I ++ V Sbjct: 2802 MSFVDCPGHEMLMRTMLNGASVMDTAILVVAADQKVPQPQTAEHLVVAEIMGLPNILAVQ 2623 Query: 146 NKIDLLP 152 NK+DL+P Sbjct: 2622 NKVDLVP 2602 >Contig604 29324 51689 Length = 51689 Score = 52.4 bits (124), Expect = 6e-06 Identities = 61/276 (22%), Positives = 116/276 (42%), Gaps = 19/276 (6%) Frame = -1 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQ 139 T++D PGH + + +IGGA D+ +LVI KG QT+ ++ I + Sbjct: 1064 TILDAPGHKNYVPNMIGGAAQADVAILVISARKGEFETGFEKGGQTRE-HARLVKTIGVK 888 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF---RGAPIIPVXXXXXXXXXXXX 196 L+VV+NK+D + D+ K+ L++T + + IP+ Sbjct: 887 YLLVVINKMDDPTVNWSKERFDECVDKLSPFLKSTGYNVKKDIVFIPMSGYTGANMLVHT 708 Query: 197 XXXXXI----PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISL 252 P ++ L + + R P + V F +G TV+ G + +G++++ Sbjct: 707 TPQVCPWYDGPTMLSYLDNLPPV-ERKADAPLRIPVVDSFKDRGL-TVIMGKVEAGTVAV 534 Query: 253 GDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESL--- 309 G ++ + KV +V + + A G+ + I V + + GLV +L Sbjct: 533 GQTIFLMPGKVALEVVGINTETNALQRAKPGENIKITVRGIEEGNVSPGLVLCDNNLVPC 354 Query: 310 HTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVM 345 T +++V ++ +K K +T G+E V+ Sbjct: 353 LTEFEVMLAVHEL--------SKEKSLLTAGYEAVL 270 >Contig68270 200 200 Length = 200 Score = 49.3 bits (116), Expect = 5e-05 Identities = 21/45 (46%), Positives = 32/45 (71%) Frame = -2 Query: 469 VYKLKHKHGLVERAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTG 513 ++K+K K G +ER D ++IG+ LFKKET++ LFVG+K+ G Sbjct: 196 IFKIKTKTGSIERVHDPNTLIGKDLFKKETDMNLFVGMKIKKDNG 62 >Contig4246 8897 9149 Length = 9149 Score = 47.8 bits (112), Expect = 2e-04 Identities = 21/66 (31%), Positives = 39/66 (59%) Frame = +1 Query: 202 IPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPAL 261 + LI L ++I P R PFLM ++ F+I G+GTV+TG + G++ +G+ +++ Sbjct: 5410 VTRLIWTLDNKIPQPKRPIDKPFLMPIEDIFAITGRGTVVTGRLEQGTLKVGEQIQVVGS 5589 Query: 262 KVVKKV 267 K + + Sbjct: 5590 KPIASI 5607 Score = 33.1 bits (74), Expect = 4.0 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 23/83 (27%) Frame = +3 Query: 91 VDCPGHASLIRTII-GGAQI---------------------IDLMMLVIDVTKGMQTQSA 128 +DCPGH I+ +I G AQ+ ++ +LV+ G Q Q+ Sbjct: 4713 IDCPGHQHYIKNMITGAAQV*SCLFSILLSLAHPLFFFVLQMEGAILVVSAPDGPQEQTR 4892 Query: 129 ECLVIG-QIACQKLVVVLNKIDL 150 E +++ ++ +V+ LNK+DL Sbjct: 4893 EHIILSREVGVPHVVIFLNKMDL 4961 >Contig8472 3981 5847 Length = 5847 Score = 41.6 bits (96), Expect = 0.011 Identities = 18/63 (28%), Positives = 35/63 (55%) Frame = +1 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 Q+T +D PGH + G + D+ +LV+ G+Q Q+ E + + + + +++V + Sbjct: 5044 QITFMDTPGHEAFTSLRERGVKTTDIALLVVAADSGVQEQTIEAIRVAKASGVQMIVCIT 5223 Query: 147 KID 149 KID Sbjct: 5224 KID 5232 >Contig195235 164 164 Length = 164 Score = 39.3 bits (90), Expect = 0.056 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = -3 Query: 130 CLVIGQIACQKLVVVLNKIDLLPEGKRQ 157 C+VIG+I C V+VLNKID LPE + + Sbjct: 90 CIVIGEITCNNAVIVLNKIDQLPEPRAE 7 >Contig6188 7064 14978 Length = 14978 Score = 37.7 bits (86), Expect = 0.16 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 27/93 (29%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM------------------------ 123 V+ VDCPGH L+ T++ GA ++D +L+I G+ Sbjct: 4986 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGELGVRRDIRTRKEKLHLTQY*YYAGNES 4807 Query: 124 --QTQSAECLVIGQIACQKLVVVL-NKIDLLPE 153 Q Q++E L +I K +++L NKIDL+ + Sbjct: 4806 CPQPQTSEHLAAIEIMKLKHIIILQNKIDLIKD 4708 >Contig3771 9035 31092 Length = 31092 Score = 37.0 bits (84), Expect = 0.28 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = +2 Query: 240 VMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL 297 + G ++SG + +GD V + + +V S++M+H P AM GD + Q KL Sbjct: 12725 IKLGRVVSGMLKVGDPVVLQPSGITTEVGSIEMYHTPRQVAMPGDLVAFKYVQHSIKL 12898 >Contig221310 113 113 Length = 113 Score = 35.8 bits (81), Expect = 0.62 Identities = 15/24 (62%), Positives = 18/24 (75%) Frame = -3 Query: 130 CLVIGQIACQKLVVVLNKIDLLPE 153 C+VIG+I C V+VLNKID L E Sbjct: 75 CIVIGEITCNNAVIVLNKIDQLQE 4 >Contig13961 1573 1573 Length = 1573 Score = 34.7 bits (78), Expect = 1.4 Identities = 17/37 (45%), Positives = 19/37 (51%) Frame = -2 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITL 49 LGH+DSGK DK P S+ERGITL Sbjct: 126 LGHVDSGKTSLARAISTLLSTAALDKSPASQERGITL 16 >Contig1144 16662 24490 Length = 24490 Score = 34.3 bits (77), Expect = 1.8 Identities = 13/18 (72%), Positives = 18/18 (100%) Frame = -2 Query: 512 TGELGIIDSAFGQSGKFK 529 TGE+G+I+S+FG+SGKFK Sbjct: 579 TGEIGVIESSFGKSGKFK 526 >Contig198746 596 596 Length = 596 Score = 33.5 bits (75), Expect = 3.1 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +1 Query: 519 DSAFGQSGKFKIHIPGGLSPESKKILTPALKKRARAGRGEATR 561 + FG++ KI PGG SP KK KK+ R GRG+ +R Sbjct: 58 EGVFGENKNGKIP-PGGFSPPPKKKKKKKKKKKKRGGRGQESR 183 >Contig83503 456 456 Length = 456 Score = 33.5 bits (75), Expect = 3.1 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = +3 Query: 409 QQWALVEFEKPVTCPRLCLVIGSRLDADI 437 Q +AL+ FEKP+ P +VI SRLD DI Sbjct: 345 QVFALLTFEKPIIAPLGSIVIASRLDIDI 431 Database: P.polycephalum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 319,018,052 Number of sequences in database: 297,657 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 189,738,944 Number of Sequences: 297657 Number of extensions: 2614909 Number of successful extensions: 10113 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 9618 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10110 length of query: 596 length of database: 106,339,350 effective HSP length: 119 effective length of query: 477 effective length of database: 70,918,167 effective search space: 33827965659 effective search space used: 33827965659 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 71 (32.0 bits)