TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_13 264 9e-74 PHYCAscaffold_87 94 5e-19 PHYCAscaffold_70 72 3e-12 PHYCAscaffold_41 65 2e-10 PHYCAscaffold_7 43 1e-09 PHYCAscaffold_102 54 9e-07 PHYCAscaffold_54 49 2e-05 PHYCAscaffold_3 44 7e-04 PHYCAscaffold_79 43 0.002 PHYCAscaffold_27 36 0.15 PHYCAscaffold_38 34 0.72 PHYCAscaffold_105 33 1.2 PHYCAscaffold_60 33 1.6 PHYCAscaffold_55 33 1.6 >PHYCAscaffold_13 Length = 1060349 Score = 264 bits (675), Expect(2) = 9e-74 Identities = 166/442 (37%), Positives = 235/442 (53%), Gaps = 4/442 (0%) Frame = -2 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 LGH+DSGK DK PQS++RGITLDLGFS F + A+++ Sbjct: 812236 LGHVDSGKTSLVRALSTQLSTAALDKHPQSQQRGITLDLGFSSFLLKPSAQVKPCL---- 812069 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLV 132 QVTLVDCPGHASL RTI+GG IID ++LVID KG+Q Q+ E L+ Sbjct: 812068 --------------QVTLVDCPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLL 811931 Query: 133 IGQ-IACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLE-NTKFRGAPIIPVXXXXXX 190 + IA + +VV L K DL+P +R I K + +++ + N F IPV Sbjct: 811930 LATLIAKRSVVVALTKTDLVPSAERDNVIGKCSHEVRSFMATNFNFHDTSSIPVVPVAVG 811751 Query: 191 XXXXXXXXXXXIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSI 250 IP+L+E L + + +P RD SG F ++VDHCFS+ G GT++TGT+LSG++ Sbjct: 811750 SNQDPQG----IPQLLEALNANLQVPERDHSGSFCLAVDHCFSVPGNGTILTGTVLSGAL 811583 Query: 251 SLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGL-VCAPESL 309 GD +E+ L KVK++Q+F + QGDR+G+ V DP L+ER L V P SL Sbjct: 811582 ERGDELELLPLGAKVKVKTLQVFKKDVAKCSQGDRVGLRVNGLDPALVERALAVSPPGSL 811403 Query: 310 HTVHAALISVEKIPYFRG-PLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFN 368 V +I V K+P+F ++ K H+TVGH T++ FF+ + E FN Sbjct: 811402 TPVTQVVIPVTKVPFFHEISCKSGGKCHVTVGHTTIIAMATFFTCLGGDKGDE---TGFN 811232 Query: 369 FSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLV 428 S Y + E+ +DE + + G +AL++FE+ V CP LV Sbjct: 811231 PSALYEYVEEL-----------SDEKEAEEGMI---------FALLQFEQAVFCPPKTLV 811112 Query: 429 IGSRLDADIHTNTCRLAFHGIL 450 + SR+D D CRLAF+G++ Sbjct: 811111 VCSRMDLDAKRFPCRLAFYGVI 811046 Score = 33.5 bits (75), Expect(2) = 9e-74 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Frame = -1 Query: 467 LKVYKLKHKHGLVERAM-----DDYSVIGRSLFKKETNIQLFVGLKVHLSTGE-LGIIDS 520 L++ ++K + G V++ + D VIGR +F K+ + V + LG I Sbjct: 810968 LQIGRVKSRDGFVDKLVMNSKEDVKEVIGREMFSKDVKWSVCQDSVVLFEESQVLGTILG 810789 Query: 521 AFGQSGKFKIHI-PGGLSPES 540 FG++GKF++ + PG S +S Sbjct: 810788 PFGKAGKFRLALAPGSSSRQS 810726 >PHYCAscaffold_87 Length = 182599 Score = 94.4 bits (233), Expect = 5e-19 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 8/239 (3%) Frame = -3 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKID 149 VDCPGHA ++ +I GA +D +LV+ G Q+ E +++ Q+ LVV +NK+D Sbjct: 97586 VDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQVGVPALVVFMNKVD 97407 Query: 150 LLPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVXXXXXXXXXXXXXXXXXIPELIE 207 + + + ++ + ++++ LE F P++ + +L++ Sbjct: 97406 QVDD---EELLELVEMEIRELLEAYDFPADDIPVVQGSALAAVEDRDHNIGRDAVLKLMD 97236 Query: 208 LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKV 267 + + I P RD PFLM V+ FSI G+GTV++G + G I+ GD VE+ LK K Sbjct: 97235 EVDAYIPDPVRDFEKPFLMPVEDVFSISGRGTVVSGRVEQGVINTGDEVELVGLKPSSKT 97056 Query: 268 --KSMQMFHMPITSAMQGDRLGICVTQFDPKLLERG-LVCAPESL--HTVHAALISVEK 321 ++MF + GD +G+ + + RG ++C P ++ HT A + V K Sbjct: 97055 TCTGVEMFKKSLDRGQAGDNVGLLLRGLKRDEVLRGQVLCKPGTINPHTKFEAEVYVLK 96879 >PHYCAscaffold_70 Length = 280435 Score = 71.6 bits (174), Expect = 3e-12 Identities = 66/282 (23%), Positives = 113/282 (40%), Gaps = 13/282 (4%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D RERGIT+D+ F P T++D PGH Sbjct: 109453 DNLKAERERGITIDIALWKFESP-------------------------KYFFTVIDAPGH 109557 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +LV+ ++K QT+ L+ + ++++V +NK Sbjct: 109558 RDFIKNMITGTSQADCAILVVASGVGEFEAGISKEGQTRE-HALLAFTLGVKQMIVAINK 109734 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGA--PIIPVXXXXXXXXXXXXXXXXXI--P 203 +D QA +++ ++ L+ ++ A P +P+ P Sbjct: 109735 MDDSSVMYGQARYEEIKNEVTTYLKKVGYKPAKIPFVPISGWEGDNMIDRSTNMPWYKGP 109914 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 L+E L + ++ P R P + + + I G GTV G + +G I G + + Sbjct: 109915 YLLEALDN-LNAPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVATFGPVGL 110091 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 +VKS++M H + A+ GD +G V K L RG V + Sbjct: 110092 STEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKELRRGFVAS 110217 >PHYCAscaffold_41 Length = 565801 Score = 65.5 bits (158), Expect = 2e-10 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 10/202 (4%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVL 145 V+ VDCPGH L+ T++ GA ++D +L++ + Q Q++E L +I Q ++++ Sbjct: 339424 VSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQ 339245 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205 NK+DL+ K AA+ ++++K + T APIIP+ + + Sbjct: 339244 NKVDLI---KEDAAV-AQHEQIKKFVAGTVAHDAPIIPI----------SAVLKYNVDVV 339107 Query: 206 IELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSVE 257 E + I IP RD + + V F + +G V G+IL G + +GD +E Sbjct: 339106 CEYICRNIPIPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILEGVLRVGDEIE 338927 Query: 258 IPALKVVKKVKSMQMFHMPITS 279 + +V K + +M +PI S Sbjct: 338926 VRP-GIVSKDEEGKMTCVPIFS 338864 >PHYCAscaffold_7 Length = 1368812 Score = 43.1 bits (100), Expect(2) = 1e-09 Identities = 25/83 (30%), Positives = 39/83 (46%) Frame = +3 Query: 223 PFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQ 282 P + + + I G GTV G + +G I G + + +VKS++M H + A+ Sbjct: 1125642 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVATFGPVGLSTEVKSVEMHHESLPEAVP 1125821 Query: 283 GDRLGICVTQFDPKLLERGLVCA 305 GD +G V K L RG V + Sbjct: 1125822 GDNVGFNVKNVSVKELRRGFVAS 1125890 Score = 39.3 bits (90), Expect(2) = 1e-09 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 11/159 (6%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D RERGIT+D+ F P T++D PGH Sbjct: 1125127 DNLKAERERGITIDIALWKFESP-------------------------KYFFTVIDAPGH 1125231 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +LV+ ++K QT+ L+ + ++++V +NK Sbjct: 1125232 RDFIKNMITGTSQADCAILVVASGVGEFEAGISKEGQTRE-HALLAFTLGVKQMIVAINK 1125408 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGA--PIIPV 184 +D QA +++ ++ L+ ++ A P +P+ Sbjct: 1125409 MDDSSVMYGQARYEEIKNEVTTYLKKVGYKPAKIPFVPI 1125525 >PHYCAscaffold_102 Length = 120866 Score = 53.5 bits (127), Expect = 9e-07 Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 26/287 (9%) Frame = -1 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQ 139 T++D PGH + + +I GA D+ +LVI KG QT+ ++ + Sbjct: 19748 TILDAPGHKNYVPNMIQGASQADIGLLVISARKGEFETGFERGGQTRE-HAMLAKTLGIN 19572 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF---RGAPIIPVXXXXXXXXXXXX 196 KL+VV+NK+D Q D+ K++ L F R IPV Sbjct: 19571 KLIVVINKMDEC--NWAQERFDECVGKLRPFLRMCGFAVKRDVAFIPVSGLHGDNVKVRL 19398 Query: 197 XXXXXI----PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISL 252 LIE + S + I R+P G + + ++ +GT+ G + SG + Sbjct: 19397 DKAKAPWYEGEALIEHMDS-MHIANRNPDGALRVPILDRYA--DRGTITLGKVESGVLKT 19227 Query: 253 GDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA------P 306 G V + V + + P+ +A G+ + I ++ + + ++C P Sbjct: 19226 GQKVVLMPTNTTAIVNQVYINEQPVRTAKPGENVTIRLSCGLDDVQKGFVLCGMKEEVPP 19047 Query: 307 ESLHTVHAALISVEKIPYFRGPLQT---KAKFHI-TVGHETVMGRLM 349 ++H A + V+ + + PL T K HI TV E ++ +L+ Sbjct: 19046 RAIHAFAAQIALVDTLEH--RPLLTAGYKCILHIHTVAQECIVAKLL 18912 >PHYCAscaffold_54 Length = 427428 Score = 48.9 bits (115), Expect = 2e-05 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Frame = -1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D + R RG+T+D+G S F VTL+D PGH Sbjct: 133122 DADEEERSRGVTMDVGTSHFETDTK-------------------------HVTLLDAPGH 133018 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE--------CLVIGQIACQKLVVVLNKI 148 I +I GA D+ +LV+ G + E L++ + ++VV +NK+ Sbjct: 133017 RDFIPKMIAGAAQADVAVLVVPAVTGEFEAAFENSGQTKEHTLLVRSLGVSQMVVAVNKM 132838 Query: 149 DLLPEGKRQAAIDKMTKKMQKTLENTKFR 177 D++ K + D + K + L+ FR Sbjct: 132837 DMVNWDKER--FDNIVKSLSNFLQGAGFR 132757 >PHYCAscaffold_3 Length = 1611504 Score = 43.9 bits (102), Expect = 7e-04 Identities = 23/82 (28%), Positives = 43/82 (52%) Frame = +1 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 + T +D PGH R AQ+ D ++L++ +G+ Q+ E + + A V+ +N Sbjct: 484231 KTTFLDTPGHFHFFRMRTSAAQVADAVLLIVAADEGVLLQTEESIGAIEEAGLPAVICIN 484410 Query: 147 KIDLLPEGKRQAAIDKMTKKMQ 168 K+DLL E +DK+ +++ Sbjct: 484411 KVDLLGEDD-DGQVDKIVDELR 484473 >PHYCAscaffold_79 Length = 222129 Score = 42.7 bits (99), Expect = 0.002 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -3 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LV+D+ G++ Q+ E L + + VV LNKID Sbjct: 60046 VIDTPGHESFTNLRNRGSSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAPFVVALNKID 59867 >PHYCAscaffold_27 Length = 705730 Score = 36.2 bits (82), Expect = 0.15 Identities = 20/62 (32%), Positives = 34/62 (54%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + +VD PGHA + ++D ++LV+D T+G +Q+ L K +VV+NK Sbjct: 491140 LNIVDTPGHADFGGEVERILSMVDGVVLVVDATEGPMSQTKFVLTKALHRGLKPLVVVNK 490961 Query: 148 ID 149 +D Sbjct: 490960 VD 490955 >PHYCAscaffold_38 Length = 550336 Score = 33.9 bits (76), Expect = 0.72 Identities = 33/169 (19%), Positives = 63/169 (37%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + LVD PGH + + ++L++D ++G+Q Q+ + +V VL K Sbjct: 472810 LNLVDTPGHVDFSYEVNRSLSACEGVLLLVDCSQGIQAQTLATYYAAKERNLHVVPVLTK 472631 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIE 207 ID+ A +D + L+ + +P +++ Sbjct: 472630 IDM-----PHAEVDDSILSLSSLLD---------VDPDEVLLTSAKSGEGIKDVLPAVVD 472493 Query: 208 LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSV 256 L + DPS P + + +GTV ++ G+I GD + Sbjct: 472492 RLPPPVEC---DPSAPLRCLLVDSYYDDYRGTVCLVKVVDGAIFPGDKI 472355 >PHYCAscaffold_105 Length = 102149 Score = 33.1 bits (74), Expect = 1.2 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Frame = -2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG--MQTQSAECLVIGQIACQKLVVVL 145 + L+D PGH + ++ D ++V+D +G +QT++ IG+ K V+++ Sbjct: 15715 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCIEGVCVQTETVLRQSIGERV--KPVLMV 15542 Query: 146 NKID 149 NK+D Sbjct: 15541 NKVD 15530 >PHYCAscaffold_60 Length = 366873 Score = 32.7 bits (73), Expect = 1.6 Identities = 26/113 (23%), Positives = 42/113 (37%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D PQ RERGIT+ G + S P + L+D PGH Sbjct: 122061 DFMPQERERGITI--GAAAISFP-----------------------WREHHINLIDTPGH 122165 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 + +++D + V+D G++ Q+ +V +NK+D Sbjct: 122166 VDFTIEVERAVRVLDGAVAVLDGVAGVEAQTETVWEQADRYNVPRIVFVNKLD 122324 >PHYCAscaffold_55 Length = 463907 Score = 32.7 bits (73), Expect = 1.6 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 21/85 (24%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG--MQTQSAECLVIGQI--------- 136 + ++DCPGH + Q+ D +LV+D +G M + C I I Sbjct: 354177 LNVLDCPGHVNFSDETTAALQVADGAVLVVDAIEGVMMNVREIICCFIAVI*VLIDVFL* 353998 Query: 137 ----------ACQKLVVVLNKIDLL 151 A LV+VLNK+D L Sbjct: 353997 TERLVKAALRANVALVLVLNKVDRL 353923 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,494,350 Number of Sequences: 917 Number of extensions: 528922 Number of successful extensions: 2371 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 2012 Number of HSP's gapped (non-prelim): 926 length of query: 596 length of database: 21,341,249 effective HSP length: 111 effective length of query: 485 effective length of database: 21,239,462 effective search space: 10301139070 effective search space used: 10301139070 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)