TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_34 281 1e-75 contig_18 89 1e-17 contig_17 81 3e-15 contig_09 60 5e-09 contig_35 48 2e-05 contig_24 47 6e-05 contig_11 45 2e-04 contig_33 43 8e-04 contig_32 37 0.034 contig_25 36 0.075 contig_28 35 0.17 contig_36 34 0.37 contig_05 30 4.1 contig_23 30 7.0 >contig_34 Length = 1750858 Score = 281 bits (718), Expect = 1e-75 Identities = 213/680 (31%), Positives = 314/680 (46%), Gaps = 98/680 (14%) Frame = +1 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 LGH+DSGK FDK PQS+ RGITLDLGFS V S Sbjct: 1179487 LGHVDSGKTALAKALSSTASTAAFDKSPQSQSRGITLDLGFSACEV-------SVEDGNA 1179645 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLV 132 Q TLVDCPGHASLIRT++GGAQIID M+LVID TKGMQ Q+AECL+ Sbjct: 1179646 DATRVLREADLTKVQCTLVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQVQTAECLI 1179825 Query: 133 IGQIACQKLVVVLNKIDLLPEGK---RQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXX 189 +G++ + LVVVLNK+D + ++AA+ + +K+Q+ T++ I+ V Sbjct: 1179826 LGEVLAKPLVVVLNKMDAIQGASPAAKEAALAALKRKLQQVFRRTRWPTVAIVEVAAAPR 1180005 Query: 190 XXXXXXXXXXXX---IPELIEL--LTSQISIPTRDPSGP--FLMSVDHCFSIKGQGTVMT 242 +P+++ L + S + P F M VDHCF+++GQGTV T Sbjct: 1180006 EVAGGIGHPLNTEAVLPQVLRAVDLAALKSAKESEAERPAQFYMLVDHCFAVRGQGTVFT 1180185 Query: 243 GTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGL 302 GT+++G + +GD+V +P L+ +KVK +Q+FH P+ A GDR+G+CV QFDP +ERG+ Sbjct: 1180186 GTVVAGVVRVGDTVLVPELQTTRKVKGLQVFHKPVEMAQSGDRVGLCVAQFDPTWMERGV 1180365 Query: 303 VCAPES----LHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAP--- 355 +C+ S L + + V ++ Y P T KFHIT+GH TVMG + +F+ P Sbjct: 1180366 LCSAASSGRALVSSSQLIARVHRVRYHPLPCDTHTKFHITIGHATVMGTMRYFARPPRAN 1180545 Query: 356 DNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATE-GHCPRQQWALV 414 ++ D SF+ S E + E+ L + + T D G+ + +A++ Sbjct: 1180546 ESLDVPGTGASFDPSIESTYVEE-LDDGVVASYTSTDTTASVPGRPLPVAPAEQDYYAVL 1180722 Query: 415 EFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLH----------------GLEDRN 458 E+PV +I RLD + N CR+A G + H G D + Sbjct: 1180723 LLERPVLAAPGVSMIAMRLDVE-RENFCRIALAGTVCHVFMEDGAAARTTTAVPGRSDHS 1180899 Query: 459 YADSFLP---RLKVYKLKHKHGLVERAMDDYSVIGRSLFKKET----------------- 498 + +P RL V + +++ V+R +D S I + +T Sbjct: 1180900 ASHGQVPAWRRLPVVRYRYRALRVDRVLDSRSCIADGVVSLQTPGAGGSGSRPAGASAGA 1181079 Query: 499 -------------------NIQLFVGLKVHLSTGEL----------------GIIDSAFG 523 +Q F+ L V + GIIDS+FG Sbjct: 1181080 RRDKGCVNAEARQRAELFAEVQKFLRLVVVFEPEDADAAMTTPQPSNPGAVKGIIDSSFG 1181259 Query: 524 QSGKFKIHIPGGL--SPESKKILTP--ALKKRARAGRGEATRQEESAERSEPSQHVVLS- 578 ++GK K+ G + P + P + AR R ++TR S E + S V L Sbjct: 1181260 KTGKVKLVFDGPVFADPAANAATAPIGSFVSAARKKRNKSTRGPGS-EDAGCSGGVFLRP 1181436 Query: 579 ----LTFKRYVFDTHKRMVQ 594 L K+Y F H + Q Sbjct: 1181437 GRILLVLKKYPFALHSGLEQ 1181496 >contig_18 Length = 735640 Score = 89.0 bits (219), Expect = 1e-17 Identities = 84/346 (24%), Positives = 142/346 (41%), Gaps = 14/346 (4%) Frame = +1 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVI-GQIACQKLVVVLNKID 149 +DCPGH ++ +I GA +D ++V+ T G+ Q+ E L+I QI LV +NK+D Sbjct: 309295 IDCPGHMDFVKNMITGAAQMDGGIIVVAATDGVMPQTREHLLICSQIGLPALVGFINKVD 309474 Query: 150 LLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELL 209 + E D + ++++ LE KF V I EL+ Sbjct: 309475 MTDED----TCDLVDMELREQLEKYKFPAEETPIVRGSALKAVEGDAKYEENILELVRKC 309642 Query: 210 TSQISIPTRDPSGPFLMSVDHCFSI--KGQGTVMTGTILSGSISLGDSVEIPAL---KVV 264 I P R+ PFLM+++H + I + V+TG + G + L E+ K Sbjct: 309643 DEWIPDPPRNTDKPFLMAIEHVYEIGKDKKSVVVTGRVDQGILKLNTDAELAGFSSKKST 309822 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICV------TQFDPKLLERGLVCAPESLHTVHAALIS 318 +V ++M+H ++ M GD +G+ + T +ERG+V A Sbjct: 309823 VRVTGIEMYHKTLSECMPGDSVGVSIVGTGDTTSLSKGNVERGMVMAATGSTN------- 309981 Query: 319 VEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQ 378 L K K + V + GR FSP ++ + F Sbjct: 309982 ----------LYNKVKAQVYVLTKDEGGRHTGFSP--------------HYRPQLFFHCA 310089 Query: 379 YLSKDLT--PAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTC 422 ++ D++ A +E +KK G+ E +++ A+ EFE + C Sbjct: 310090 DVTADMSFPEAEKHREELNKKFGRGPE-EDKKKEAAMKEFESKLVC 310224 >contig_17 Length = 671483 Score = 80.9 bits (198), Expect = 3e-15 Identities = 71/280 (25%), Positives = 111/280 (39%), Gaps = 12/280 (4%) Frame = -2 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F P T++D PGH Sbjct: 69292 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 69188 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148 I+ +I G D +L+ID T G Q+ E L+ + +++VV NK+ Sbjct: 69187 RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 69008 Query: 149 DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXI--PE 204 D Q+ D+++K++ L+ + + IP+ P Sbjct: 69007 DDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIERSDNMPWYKGPT 68828 Query: 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264 L++ L + P R P + + + I G GTV G + +G + GD V V Sbjct: 68827 LLDAL-DMLEPPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT 68651 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVC 304 +VKS++M H + A GD +G V K + RG VC Sbjct: 68650 TEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVC 68531 >contig_09 Length = 588727 Score = 60.1 bits (144), Expect = 5e-09 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 13/191 (6%) Frame = -2 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQ-IACQKLVVVLN 146 + VDCPGH L+ T++ GA I+D +L+I + Q Q+ E L + I L+V+ N Sbjct: 451506 SFVDCPGHDVLMATMLNGAAIMDAALLLIAANESFPQPQTLEHLAAAEMIGVSSLIVLQN 451327 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIP--- 203 K+DL+ + +R AA + T T + AP+IP+ IP Sbjct: 451326 KVDLVSK-ERAAAQYSIIHHYLAT--KTAYAKAPVIPICAQQHVNISFLLDYLVHIPLPR 451156 Query: 204 ------ELIELLTS-QISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSV 256 + + +L S +S+P P+G D ++K G V+ GT+ +G + +GD + Sbjct: 451155 RQLHHAQYMNVLRSFDVSLP--GPAG------DGAKALK--GGVVGGTVAAGVLCVGDEI 451006 Query: 257 E-IPALKVVKK 266 E IP L V+++ Sbjct: 451005 EIIPGLLVLRR 450973 Score = 50.8 bits (120), Expect = 3e-06 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 2/152 (1%) Frame = -2 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVLN 146 + VDCPGH L+ T++ GA I+D +L+I + Q Q+ E L +I + LVV+ N Sbjct: 448200 SFVDCPGHDVLMATMLNGAAIMDAALLLIAANESFPQPQTLEHLKAVEIMKLRHLVVLQN 448021 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELI 206 KIDL+ E K + ++ L+N PI+P+ + L+ Sbjct: 448020 KIDLVGEVKAH----DQYRHVRAYLDNIAL-NVPIVPI----------SAQLKRNVDYLL 447886 Query: 207 ELLTSQISIPTRDPSGPFLMSVDHCFSIKGQG 238 E L I +P R P M+V F I G Sbjct: 447885 EYLL-HIPMPVRQLKAPVRMTVVRSFDINKPG 447793 Score = 33.1 bits (74), Expect = 0.63 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 9/127 (7%) Frame = -3 Query: 141 LVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXX 200 LVV+ NKIDL+ E K + ++ L+N PI+P+ Sbjct: 447614 LVVLQNKIDLVGEVKAH----DQYRHVRAYLDNIALN-VPIVPISAQLKRN--------- 447477 Query: 201 XIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKG---------QGTVMTGTILSGSIS 251 + L+E L I +P R P M+V F I +G V GT+ G I Sbjct: 447476 -VDYLLEYLL-HIPMPVRQLKAPVRMTVVRSFDINKPGEGDIESLKGGVAGGTVTQGVIK 447303 Query: 252 LGDSVEI 258 +G VEI Sbjct: 447302 VGQVVEI 447282 >contig_35 Length = 2113966 Score = 48.1 bits (113), Expect = 2e-05 Identities = 66/304 (21%), Positives = 115/304 (37%), Gaps = 14/304 (4%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D+ + R RG+T+D G CF +V ++D PGH Sbjct: 1667968 DQCEEERRRGVTIDSGSFCFETE-------------------------HRRVHILDAPGH 1668072 Query: 97 ASLIRTIIGGAQIIDLMMLVIDV-TKGMQT-----QSAECLVIGQIACQKLVVVLNKIDL 150 + ++I A D +LV+ T +T + LV+ + +VV +NK+D Sbjct: 1668073 KDFVLSMISSATQADAALLVVTAATSEFETGLHHGTKSHLLVLKTLGVGSIVVAVNKMDA 1668252 Query: 151 LPEGKRQAAIDKMTKKMQKTLENTKFRG------APIIPVXXXXXXXXXXXXXXXXXIPE 204 + Q D + +++Q L+ T+ PI + Sbjct: 1668253 VAYS--QERYDYVVRELQLLLKQTRIPEEAIIGFCPISGMAGVNITQRGAKETPWYHDLS 1668426 Query: 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264 LIE++ + + +R + P +S+ QGT + + SG + GD+V +V Sbjct: 1668427 LIEMI-DKCPLESRLLNRPLRLSLQDV-----QGTTLYAKVESGRLFTGDTVHFVPSEVR 1668588 Query: 265 KKVKSMQMFHM--PITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKI 322 VKS+Q + P+ A G+ + I L + C P L +H++ I Sbjct: 1668589 VAVKSIQKPTVAGPVLVAFAGEMVEISTNSSVTGLYPGCVGCEPNLL--IHSSTDFEAHI 1668762 Query: 323 PYFR 326 FR Sbjct: 1668763 QTFR 1668774 >contig_24 Length = 877124 Score = 46.6 bits (109), Expect = 6e-05 Identities = 22/65 (33%), Positives = 39/65 (60%) Frame = +3 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKI 148 T +D PGH + T + D++ LVI V +G+++Q+ E + + + ++VVLNK+ Sbjct: 493734 TFIDTPGHRIFVETRFHVQLMADVIALVISVAEGIESQTHETIKVALNVDKPVIVVLNKL 493913 Query: 149 DLLPE 153 DLL + Sbjct: 493914 DLLSD 493928 >contig_11 Length = 580223 Score = 45.1 bits (105), Expect = 2e-04 Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 18/244 (7%) Frame = +2 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVID---------VTKGMQTQSAECLVIGQIA 137 +VT++D PGH + + ++IGGA D+ +LVI KG QT+ +++ Sbjct: 473840 RVTVLDAPGHKAFVPSMIGGATQADICVLVISSRTGEFETGFEKGGQTRE-HAMLVRTCG 474016 Query: 138 CQKLVVVLNKIDLLPEGKRQ--AAIDKMTKKM-QKTLENTKFRGAPIIPVXXXXXXXXXX 194 ++++ V+NK+D + K + +D++ + Q + + + +PV Sbjct: 474017 VKQMICVINKMDEMKWSKERYNEIVDRLKPFLRQNGYDEERAKNLIFMPVAGLTGENLIK 474196 Query: 195 XXXXXXXI----PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSI 250 ++E++ ++ F + + + G+ T + G + SGSI Sbjct: 474197 HVEPSHCDWYKGKTMMEVIDDLKLPESKTEDDVFCIPLVGAYKDDGK-THIYGKVESGSI 474373 Query: 251 SLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA--PES 308 ++G+ +++ K V+ + + GD + + V D + G V P S Sbjct: 474374 AVGERIQVLPTKAEALVEGISIESTEFEKCYPGDNVHLHVRGIDENDIHGGYVATSIPTS 474553 Query: 309 LHTV 312 L V Sbjct: 474554 LRAV 474565 >contig_33 Length = 1453978 Score = 42.7 bits (99), Expect = 8e-04 Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Frame = +3 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LV+D+ G++ Q+ E + + + +V LNK+D Sbjct: 1126965 VIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTRESIRLLREKRCPFIVALNKVD 1127144 Query: 150 LLPEGKRQAAID-KMTKKMQKTLENTKF 176 L + + +D + + ++QK ++F Sbjct: 1127145 RLFDWQPHENMDIQQSLELQKAHVRSEF 1127228 >contig_32 Length = 1559911 Score = 37.4 bits (85), Expect = 0.034 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Frame = -1 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKL--VVV 144 Q+T++D PGH LI G ++ D ++ +D + + S E L+ I ++L V+V Sbjct: 866080 QITVIDTPGHPDLIGETAAGMRLADAVLFCVDAAESLSDHS-ERLLRHAIVNEQLPVVLV 865904 Query: 145 LNKIDLL 151 + K+D L Sbjct: 865903 ITKVDRL 865883 >contig_25 Length = 897883 Score = 36.2 bits (82), Expect = 0.075 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + LVD PGH + ++ D ++++DV G+ Q++ L + +VLNK Sbjct: 785161 LNLVDSPGHIDFSCEVSTAMRLCDGAVVIVDVVDGVTQQTSSILRHTYQEGLSMCLVLNK 784982 Query: 148 IDLL 151 IDLL Sbjct: 784981 IDLL 784970 >contig_28 Length = 1171725 Score = 35.0 bits (79), Expect = 0.17 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = -2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + +I+D ++ + D + G+Q QS L + L+ LNK Sbjct: 780923 INLIDTPGHVDFTVEVERTMRIVDGVVALFDASAGVQAQSYTVLQQSRRFNAPLIAFLNK 780744 Query: 148 ID 149 +D Sbjct: 780743 MD 780738 Score = 30.4 bits (67), Expect = 4.1 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +3 Query: 538 PESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRMVQSP 596 P+ + P+L RG+ T Q R PS+H S T + TH ++ SP Sbjct: 1045746 PQPNASVCPSLHGDLCCLRGDITTQHREGAREAPSRHTEPS*THRHIFTPTHPILLSSP 1045922 >contig_36 Length = 2713248 Score = 33.9 bits (76), Expect = 0.37 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L + VV +NK Sbjct: 60762 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERIRPVVFINK 60583 Query: 148 ID 149 +D Sbjct: 60582 VD 60577 >contig_05 Length = 452426 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -2 Query: 537 SPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTF 581 +P + K + + AR GE TRQE A + E +QHVV + + Sbjct: 198451 APAALKDVRQDWRMCARRQHGEETRQEGRASKREDAQHVVCTCVY 198317 >contig_23 Length = 783272 Score = 29.6 bits (65), Expect = 7.0 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -3 Query: 381 SKDLTPAVT---DNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGS 431 ++ LTP T D+ E KK AT G R + E+P TC RLC + G+ Sbjct: 177207 ARTLTPIHTHKHDDAELKKKHKNATRGDSERSRGR--HRERPHTCARLCRIQGT 177052 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,139,580 Number of Sequences: 36 Number of extensions: 327681 Number of successful extensions: 1797 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 1595 Number of HSP's gapped (non-prelim): 542 length of query: 596 length of database: 10,814,999 effective HSP length: 106 effective length of query: 490 effective length of database: 10,811,183 effective search space: 5297479670 effective search space used: 5297479670 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)