TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338242838|gb|AFNH01001746.1| Gregarina niphandrodes asmbl.254...    72   4e-13
gi|338242864|gb|AFNH01001733.1| Gregarina niphandrodes asmbl.253...    67   1e-11
gi|338244959|gb|AFNH01000685.1| Gregarina niphandrodes asmbl.159...    66   4e-11
gi|338243594|gb|AFNH01001368.1| Gregarina niphandrodes asmbl.219...    44   2e-04
gi|338241698|gb|AFNH01002316.1| Gregarina niphandrodes asmbl.306...    38   0.011
gi|338241546|gb|AFNH01002392.1| Gregarina niphandrodes asmbl.313...    35   0.074
gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.266...    33   0.22 
gi|338240499|gb|AFNH01002916.1| Gregarina niphandrodes asmbl.362...    30   2.4  
gi|338242998|gb|AFNH01001666.1| Gregarina niphandrodes asmbl.246...    30   3.1  
gi|338242786|gb|AFNH01001772.1| Gregarina niphandrodes asmbl.256...    29   4.1  

>gi|338242838|gb|AFNH01001746.1| Gregarina niphandrodes asmbl.2543,
            whole genome shotgun sequence
          Length = 7176

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 67/282 (23%), Positives = 115/282 (40%), Gaps = 13/282 (4%)
 Frame = -3

Query: 37   DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96
            DK    RERGIT+D+    F  P                           + T++D PGH
Sbjct: 3058 DKLKAERERGITIDIALWKFETP-------------------------RFEYTVIDAPGH 2954

Query: 97   ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
               I+ +I G    D+ +LV+    G        + Q+ E  L+   +   +++V +NK+
Sbjct: 2953 RDFIKNMITGTSQADVALLVVPADIGGFEGAFSKEGQTREHALLAYTLGVSQMIVGINKM 2774

Query: 149  DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIP----- 203
            D    G +Q   D++ K++   L+   ++    I                   +P     
Sbjct: 2773 DAC--GYKQDRFDEIQKEVSGYLKRVGYK-VDKIHFVAISGFMGDNMIEKSPNMPWYKGL 2603

Query: 204  ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263
             L+E L  ++ +P R    P  + +   + I G GTV  G + +G++    SV      V
Sbjct: 2602 TLVEAL-DKMEVPKRPDEKPLRLPLQDVYKIGGIGTVPVGRVETGTLKPNMSVCFAPSGV 2426

Query: 264  VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
               VKS++M H+ +  A+ GD +G  V     K ++RG V +
Sbjct: 2425 TTDVKSVEMHHVQLEKAIPGDNVGFNVKNVSVKDIKRGNVAS 2300


>gi|338242864|gb|AFNH01001733.1| Gregarina niphandrodes asmbl.2531,
            whole genome shotgun sequence
          Length = 9575

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 13/267 (4%)
 Frame = -2

Query: 37   DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96
            DK    RERGIT+D+    F  P                           + T++D PGH
Sbjct: 1624 DKLKAERERGITIDIALWKFETP-------------------------RFEYTVIDAPGH 1520

Query: 97   ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
               I+ +I G    D+ +LV+    G        + Q+ E  L+   +   +++V +NK+
Sbjct: 1519 RDFIKNMITGTSQADVALLVVPADIGGFEGAFSKEGQTREHALLAYTLGVSQMIVGINKM 1340

Query: 149  DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIP----- 203
            D    G +Q   D++ K++   L+   ++    I                   +P     
Sbjct: 1339 DAC--GYKQDRFDEIQKEVSGYLKRVGYK-VDKIHFVAISGFMGDNMIEKSPNMPWYKGL 1169

Query: 204  ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263
             L+E L  ++ +P R    P  + +   + I G GTV  G + +G++    SV      V
Sbjct: 1168 TLVEAL-DKMEVPKRPDEKPLRLPLQDVYKIGGIGTVPVGRVETGTLKPNMSVCFAPSGV 992

Query: 264  VKKVKSMQMFHMPITSAMQGDRLGICV 290
               VKS++M H+ +  A+ GD +G  V
Sbjct: 991  TTDVKSVEMHHVQLEKAIPGDNVGFNV 911


>gi|338244959|gb|AFNH01000685.1| Gregarina niphandrodes asmbl.15994,
            whole genome shotgun sequence
          Length = 8241

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 78/305 (25%), Positives = 126/305 (41%), Gaps = 32/305 (10%)
 Frame = -1

Query: 43   RERGITLDLG------FSCFSVPLPARLRS---SXXXXXXXXXXXXXXXXXXXQVTLVDC 93
            +ER IT+ LG      F C   P P    S                        V+ VDC
Sbjct: 2925 KERNITIKLGYANAKLFKCDICPSPGAYSSHGSGHADEYPCPTCGKGVRRVVRHVSFVDC 2746

Query: 94   PGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVLNKIDLL 151
            PGH  L+ T++ GA ++D  +L++   +   Q Q++E L   +I   + L+V+ NK++L+
Sbjct: 2745 PGHDILMATMLNGAAVMDAALLLVAGNEPCPQPQTSEHLAAVEIMKLRHLIVLQNKVELI 2566

Query: 152  PEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELLTS 211
             E   Q  + +  ++++  ++ T    API+P+                 +  + E + S
Sbjct: 2565 KE--EQCLVQQ--EQIKDFVKGTAADNAPIVPI----------SAILKYNMDVVAEYMCS 2428

Query: 212  QISIPTRDPSGPFLMSVDHCFSIKGQGT--------VMTGTILSGSISLGDSVEI-PAL- 261
            +I++P RD S    M V   F +   G         V  G+IL G   LGD++E  P L 
Sbjct: 2427 RIAVPVRDFSAKPEMIVIRSFDVNKPGDSIEAMVGGVAGGSILKGVFKLGDAIECRPGLV 2248

Query: 262  -KVVKKVKSMQMFHMPITS----------AMQGDRLGICVTQFDPKLLERGLVCAPESLH 310
             K+     S++     ITS          A+ G  +G+  T  DP L     +      H
Sbjct: 2247 RKLPDDTFSVRPIRSVITSLHAEQNELQFAVPGGLIGVGST-IDPSLTRADALVGQVLGH 2071

Query: 311  TVHAA 315
              H A
Sbjct: 2070 PDHMA 2056


>gi|338243594|gb|AFNH01001368.1| Gregarina niphandrodes asmbl.2197,
            whole genome shotgun sequence
          Length = 2909

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = -3

Query: 90   LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECL-VIGQIACQKLVVVLNKI 148
            ++D PGHAS       G+ + DL +LV+D+  G++ Q+ E + ++ Q  C   VV LNK+
Sbjct: 1704 IIDTPGHASFSNLRKRGSSLCDLAILVVDIMHGLEPQTRESIQMLKQRRC-PFVVALNKV 1528

Query: 149  D 149
            D
Sbjct: 1527 D 1525


>gi|338241698|gb|AFNH01002316.1| Gregarina niphandrodes asmbl.3063,
            whole genome shotgun sequence
          Length = 20465

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
 Frame = +3

Query: 37   DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96
            D   + RE+GIT ++G + F                              + T++D PGH
Sbjct: 5670 DVNEEEREKGITTEVGRAGFEFKT-------------------------RRFTILDAPGH 5774

Query: 97   ASLIRTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQKLVVVLNK 147
             S +  ++ GA   D+ +L+I   KG          QTQ    L+   +    L+V +NK
Sbjct: 5775 KSFVPEMLAGASQADIGVLIISARKGEFESGFERGGQTQE-HALLAKTLGVNYLIVAVNK 5951

Query: 148  ID 149
            +D
Sbjct: 5952 MD 5957


>gi|338241546|gb|AFNH01002392.1| Gregarina niphandrodes asmbl.3137,
            whole genome shotgun sequence
          Length = 5475

 Score = 35.0 bits (79), Expect = 0.074
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
 Frame = -1

Query: 210  TSQISIPTRDP---SGPFLMSVDHCFSIKG-QGT-VMTGTILSGSIS----LGDSVEIPA 260
            T Q+S P+ DP     PF  +  +    K  QGT V + TI++ +++    L    E P 
Sbjct: 2274 TKQLSSPSSDPPFNEAPFNEAPFNEAPFKDTQGTSVQSNTIMANNVADLCTLSPPAEHPR 2095

Query: 261  LKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVE 320
            +  + K+ S      P+ S     R G+ +          G V   ++LH  H AL   +
Sbjct: 2094 ISPLPKLTS------PLISTASSARCGLLL----------GKVFVRDNLH--HIALYGRK 1969

Query: 321  KIPYFRGPLQ 330
            ++P+FR PLQ
Sbjct: 1968 QLPFFRRPLQ 1939


>gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.2669,
            whole genome shotgun sequence
          Length = 19534

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 88   VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147
            + L+D PGH      +    ++ D  ++V+D  +G+  Q+   L        K V+ +NK
Sbjct: 8031 INLIDSPGHVDFSSEVTAALRVTDGALVVVDAVEGVCVQTETVLRQALSERVKPVLHMNK 8210

Query: 148  ID 149
            +D
Sbjct: 8211 VD 8216


>gi|338240499|gb|AFNH01002916.1| Gregarina niphandrodes asmbl.3621,
            whole genome shotgun sequence
          Length = 33808

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 353  PAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWA 412
            P   N    P +  F     YLFQ + L+++LT  +  N +            C R QW+
Sbjct: 5241 PRLANPPSPPSVTFFLAITTYLFQSEKLTRNLTATLDHNSQP-----------CSRCQWS 5387

Query: 413  LVEFEKPVTCP 423
            L E   P++ P
Sbjct: 5388 LSECSYPMSPP 5420


>gi|338242998|gb|AFNH01001666.1| Gregarina niphandrodes asmbl.2469,
            whole genome shotgun sequence
          Length = 12895

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 209  LTSQISIPTRDPSGPFLMS--VDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKK 266
            L+S+I +  +D     L    VD    ++  G +M+  + +GSI + D+    A +++K 
Sbjct: 5796 LSSEIRVQAKDSLIKLLAEAEVDKDEWVRKLGRLMSSFVTTGSIDVRDTDSETAFQILKH 5975

Query: 267  VKSMQMFHMP 276
            V S  + H P
Sbjct: 5976 VNSSNVKHKP 6005


>gi|338242786|gb|AFNH01001772.1| Gregarina niphandrodes asmbl.2568,
            whole genome shotgun sequence
          Length = 10222

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 508  VHLSTGELGIIDSAFGQSGKFKIHIPGGLS 537
            VHLS GE G++DS   +SG   +    G S
Sbjct: 1334 VHLSAGEAGMVDSGAAESGTVDLDAGSGYS 1245


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,590,412
Number of Sequences: 3680
Number of extensions: 140651
Number of successful extensions: 662
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 390
length of query: 596
length of database: 5,120,956
effective HSP length: 100
effective length of query: 496
effective length of database: 4,752,956
effective search space: 2357466176
effective search space used: 2357466176
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)