TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig741 | | 1 to 201246 270 3e-72 Cf_Contig900 | | 1 to 239103 90 5e-18 Cf_Contig1044 | | 1 to 114976 90 6e-18 Cf_Contig246 | | 1 to 1408 82 1e-15 Cf_Contig1068 | | 1 to 155071 58 3e-08 Cf_Contig181 | | 1 to 1222 55 1e-07 Cf_Contig599 | | 1 to 11661 48 3e-05 Cf_Contig968 | | 1 to 318049 42 0.001 Cf_Contig606 | | 1 to 135677 41 0.003 Cf_Contig960 | | 1 to 129949 35 0.25 Cf_Contig1059 | | 1 to 41438 34 0.42 Cf_Contig837 | | 1 to 88202 30 6.1 >Cf_Contig741 | | 1 to 201246 Length = 201246 Score = 270 bits (690), Expect = 3e-72 Identities = 206/673 (30%), Positives = 300/673 (44%), Gaps = 91/673 (13%) Frame = +1 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 LGH+DSGK FDK PQS+ RGITLDLGFS V + Sbjct: 127330 LGHVDSGKTALAKALSRTASTAAFDKSPQSQSRGITLDLGFSACEV--------AQDDSD 127485 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLV 132 Q TLVDCPGHASLIRT++GGAQIID M+LVID TKGMQ Q+AECLV Sbjct: 127486 DARAVLRAANLDKVQCTLVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQAQTAECLV 127665 Query: 133 IGQIACQKLVVVLNKIDLLPEG---KRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXX 189 +G++ + LVV LNK+D + ++ AA+ M +K+Q T T++ ++ V Sbjct: 127666 LGEVLAKPLVVALNKVDAVQGATLAEKTAAVAAMKRKLQLTFRRTRWPTVTVVEVAAAPR 127845 Query: 190 XXXXXXXXXXXXI--PELIELLTSQI----------SIPTRDPSGP--FLMSVDHCFSIK 235 + P + L Q+ + R+ P F M VDHCF+++ Sbjct: 127846 DVADGSSSSSSGMAAPYNVSALLPQVLRAVDLAALKAAKAREGERPERFYMLVDHCFAVR 128025 Query: 236 GQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDP 295 GQGTV TGT+++G + +GD+V +P L+ +KVK +Q+FH P+ +A GDR+G+CV QFDP Sbjct: 128026 GQGTVFTGTVVAGMVRVGDTVLVPDLQTTRKVKGLQVFHQPVETARSGDRVGLCVAQFDP 128205 Query: 296 KLLERGLVC----APESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFF 351 +ERG++C + +L + + V K+ Y T KFHIT+GH TVMG + +F Sbjct: 128206 ASMERGVLCSSAGSERTLVSTSQLIAQVHKVRYHPFLADTHTKFHITIGHATVMGTMRYF 128385 Query: 352 SPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATE---GHCPR 408 S + D+F+ S E + E+ + T D A G Sbjct: 128386 SRPHVSAAAGGSGDTFDPSVESAYVEELGEAAVATYSTLQSSTDSAAVAGRPLPIGAAAS 128565 Query: 409 QQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNYA-------- 460 +A++ E+PV ++ RLD + N CR+A G + H A Sbjct: 128566 DFYAVLLLERPVLAAVGNAMVAMRLDVE-RDNFCRIALAGSVCHTFPACEIAGGGAAAES 128742 Query: 461 -DSFLPRLKVYKLKHKHGLVERAMDDYSVI------------------------GRSLFK 495 + RL V + + + V+R +D S I GR Sbjct: 128743 DGAAWRRLNVVRYRARALRVDRVLDSRSCIADGVVSLDATVPAASGGRASKPAEGRQKSD 128922 Query: 496 KETNIQLFVGLKVHLSTGE---------------------------------LGIIDSAF 522 + +Q F+ L+V E G+IDS F Sbjct: 128923 LFSEVQKFLRLRVVFEPEEDAAAEGETAGQTESATECDAVAAVAQGKATGTVTGVIDSTF 129102 Query: 523 GQSGKFKIHIPGGLSPESKKILTPALK-KRARAGRGEATRQEESAERSEPSQHVVLSLTF 581 G++GK K+ + E+ +PA K K+ A G+ R S + L L Sbjct: 129103 GKTGKVKLVFAAPVFAEA----SPAAKRKKKTAEDGDDERGSSSGGGGVFLRRGRLLLIL 129270 Query: 582 KRYVFDTHKRMVQ 594 K++ F H + Q Sbjct: 129271 KKHPFALHSGLDQ 129309 >Cf_Contig900 | | 1 to 239103 Length = 239103 Score = 90.1 bits (222), Expect = 5e-18 Identities = 86/347 (24%), Positives = 145/347 (41%), Gaps = 15/347 (4%) Frame = -3 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVI-GQIACQKLVVVLNKID 149 +DCPGH ++ +I GA +D ++V+ T G+ Q+ E L+I QI LV +NK+D Sbjct: 70249 IDCPGHMDFVKNMITGAAQMDGGIIVVAATDGVMPQTREHLLICSQIGLPALVGFINKVD 70070 Query: 150 LLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELL 209 + + D + ++++ LE KF V I EL++ Sbjct: 70069 MTDD----ETCDLVDMEVREQLEKYKFPAEETPIVRGSALKALEGDAKYEAAILELVKKC 69902 Query: 210 TSQISIPTRDPSGPFLMSVDHCFSI--KGQGTVMTGTILSGSISLGDSVEI---PALKVV 264 I P R+ PFLM+++H + I + ++TG + G + L E+ A K Sbjct: 69901 DEWIPDPPRNTDKPFLMAIEHVYEIGKDKKSVIVTGRVDQGVLKLNTEAELAGFSAKKST 69722 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICV------TQFDPKLLERGLV-CAPESLHTVHAALI 317 KV ++M+H + M GD +G+ + T +ERG+V AP S + Sbjct: 69721 VKVTGIEMYHKTLDECMPGDSVGVSIVGAGDTTSLSKDNVERGMVMAAPGSTN------- 69563 Query: 318 SVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQE 377 L K K + V + GR FSP ++ + F Sbjct: 69562 -----------LYNKVKAQVYVLTKDEGGRHTGFSP--------------HYRPQLFFHC 69458 Query: 378 QYLSKDLT--PAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTC 422 ++ D++ A +E +KK G+ E +++ L EFE + C Sbjct: 69457 ADVTADMSFPEAEKQREELNKKYGRGAEEE-KKKEAELKEFESKLVC 69320 >Cf_Contig1044 | | 1 to 114976 Length = 114976 Score = 89.7 bits (221), Expect = 6e-18 Identities = 86/347 (24%), Positives = 145/347 (41%), Gaps = 15/347 (4%) Frame = +1 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVI-GQIACQKLVVVLNKID 149 +DCPGH ++ +I GA +D ++V+ T G+ Q+ E L+I QI LV +NK+D Sbjct: 19204 IDCPGHMDFVKNMITGAAQMDGGIIVVAATDGVMPQTREHLLICSQIGLPALVGFINKVD 19383 Query: 150 LLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELL 209 + + D + ++++ LE KF V I EL++ Sbjct: 19384 MTDD----ETCDLVDMEVREQLEKYKFPAEETPIVRGSALKALEGDAKYEAAILELVKKC 19551 Query: 210 TSQISIPTRDPSGPFLMSVDHCFSI--KGQGTVMTGTILSGSISLGDSVEI---PALKVV 264 I P R+ PFLM+++H + I + ++TG + G + L E+ A K Sbjct: 19552 DEWIPDPPRNTDKPFLMAIEHVYEIGKDKKSVIVTGRVDQGVLKLNTEAELAGFSAKKST 19731 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICV------TQFDPKLLERGLV-CAPESLHTVHAALI 317 KV ++M+H + M GD +G+ + T +ERG+V AP S + Sbjct: 19732 VKVTGIEMYHKTLDECMPGDSVGVSIVGAGDTTSLSKDNVERGMVMAAPGSTN------- 19890 Query: 318 SVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQE 377 L K K + V + GR FSP ++ + F Sbjct: 19891 -----------LYNKVKAQVYVLTKDEGGRHTGFSP--------------HYRPQLFFHC 19995 Query: 378 QYLSKDL--TPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTC 422 ++ D+ + A +E +KK G+ E +++ L EFE + C Sbjct: 19996 ADVTADMSFSEAEKQREELNKKYGRGAE-EDKKKEAELKEFESKLVC 20133 >Cf_Contig246 | | 1 to 1408 Length = 1408 Score = 82.4 bits (202), Expect = 1e-15 Identities = 72/280 (25%), Positives = 113/280 (40%), Gaps = 12/280 (4%) Frame = -2 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F P T++D PGH Sbjct: 1227 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 1123 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148 I+ +I G D +L+ID T+G Q+ E L+ + +++VV NK+ Sbjct: 1122 RDFIKNMITGTSQADAAILMIDSTQGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 943 Query: 149 DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXI--PE 204 D QA ++++K++ L+ + + IP+ P Sbjct: 942 DDKTVQYAQARYEEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMSWYKGPT 763 Query: 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264 L+E L + P R P + + + I G GTV G + +G + GD V V Sbjct: 762 LLEAL-DLLEAPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDVVVFAPANVT 586 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVC 304 +VKS++M H + A+ GD +G V K + RG VC Sbjct: 585 TEVKSIEMHHEQLAEAVPGDNVGFNVKNVSVKDIRRGNVC 466 >Cf_Contig1068 | | 1 to 155071 Length = 155071 Score = 57.8 bits (138), Expect = 3e-08 Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 12/193 (6%) Frame = -2 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVLN 146 + VDCPGH L+ T++ GA I+D +L+I + Q Q+ E L +I L+V+ N Sbjct: 99315 SFVDCPGHDVLMATMLNGAAIMDAALLLIAANESFPQPQTLEHLKAVEIMKLHHLIVLQN 99136 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELI 206 KIDL+ E K ++++ L+N PI+P+ + L+ Sbjct: 99135 KIDLVGEVKAH----DQYRQIRAYLDNIAL-NVPIVPI----------SAQLKRNVDYLL 99001 Query: 207 ELLTSQISIPTRDPSGPFLMSVDHCFSIKG---------QGTVMTGTILSGSISLGDSVE 257 E L I +P R P M+V F I +G V GT+ G I +G VE Sbjct: 99000 EYLL-HIPMPQRQLKTPVRMTVVRSFDINKPGEGDIENLKGGVAGGTVTQGVIQVGQVVE 98824 Query: 258 I-PALKVVKKVKS 269 I P L V+ +KS Sbjct: 98823 IRPGL--VRTLKS 98791 Score = 57.4 bits (137), Expect = 4e-08 Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 6/184 (3%) Frame = -3 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQ-IACQKLVVVLN 146 + VDCPGH L+ T++ GA I+D +L+I + Q Q+ E L + I L+V+ N Sbjct: 102584 SFVDCPGHDVLMATMLNGAAIMDAALLLIAANESFPQPQTLEHLAAAEMIGVPSLLVLQN 102405 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELI 206 K+DL+ K AA T + T + AP+IP+ IP Sbjct: 102404 KVDLV--SKAHAAAQYAIIHHYLTTK-TAYARAPVIPICAQKHLNLAYLLDYLVHIPLPR 102234 Query: 207 ELL--TSQISI-PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVE-IPALK 262 L T +SI + D S P C ++K G V+ GT+ +G + +GD +E IP L Sbjct: 102233 RQLRQTPYLSILRSFDVSLPGPAGQRGCENLK--GGVVGGTVAAGVLCVGDEIEIIPGLL 102060 Query: 263 VVKK 266 +++ Sbjct: 102059 TLRR 102048 >Cf_Contig181 | | 1 to 1222 Length = 1222 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/102 (32%), Positives = 48/102 (47%) Frame = -3 Query: 203 PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK 262 P L+E L + P R P + + + I G GTV G + +G + GD V Sbjct: 722 PTLLEAL-DLLEAPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDVVVFAPAN 546 Query: 263 VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVC 304 V +VKS++M H + A+ GD +G V K + RG VC Sbjct: 545 VTTEVKSIEMHHEQLAEAVPGDNVGFNVKNVSVKDIRRGNVC 420 Score = 38.1 bits (87), Expect = 0.022 Identities = 25/86 (29%), Positives = 33/86 (38%) Frame = -1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F P T++D PGH Sbjct: 1183 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 1079 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG 122 I+ +I G D +L+ID T G Sbjct: 1078 RDFIKNMITGTSQADAAILMIDSTHG 1001 >Cf_Contig599 | | 1 to 11661 Length = 11661 Score = 47.8 bits (112), Expect = 3e-05 Identities = 54/247 (21%), Positives = 97/247 (39%), Gaps = 12/247 (4%) Frame = +2 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D+ + R RG+T+D G CF +V ++D PGH Sbjct: 806 DQSEEERRRGVTIDSGSFCFETA-------------------------NRRVHILDAPGH 910 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVT-----KGMQTQSAE-CLVIGQIACQKLVVVLNKIDL 150 + +I A D +LV++ G+Q + E LV+ + +VV +NK+D Sbjct: 911 KDFVLNMISSATQADAALLVVNAATSEFETGLQHGTKEHLLVLKTLGVGSIVVAVNKMDS 1090 Query: 151 LPEGKRQAAIDKMTKKMQKTLENTKFRG------APIIPVXXXXXXXXXXXXXXXXXIPE 204 + K + D + +++Q L+ T+ PI + P Sbjct: 1091 VKFSKDR--YDYVVRELQLLLKQTRIAEDAVIGFCPISGMAGTNICEVDAAAAPWYKGPC 1264 Query: 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264 L++++ + + +R GP +S+ QG+ + + SG + GD+V V Sbjct: 1265 LLDMI-DKCPLESRLVGGPLRLSLQDV-----QGSTLYAKVESGKLFTGDNVVFVPGDVR 1426 Query: 265 KKVKSMQ 271 VKS+Q Sbjct: 1427 IAVKSVQ 1447 >Cf_Contig968 | | 1 to 318049 Length = 318049 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = +1 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKI 148 T +D PGH + T + D ++LV+ V G+ Q+ E + + + ++VV KI Sbjct: 60556 TFLDSPGHQLFVETRFHLHLVSDFIILVVSVVDGVGAQTHETVKVALNVDKPVIVVFTKI 60735 Query: 149 DLLPE 153 DLLP+ Sbjct: 60736 DLLPD 60750 >Cf_Contig606 | | 1 to 135677 Length = 135677 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/62 (29%), Positives = 35/62 (56%) Frame = -2 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LV+D+ G++ Q+ E + + + ++ LNK+D Sbjct: 65869 VIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTRESIRLLREKRCPFIIALNKVD 65690 Query: 150 LL 151 L Sbjct: 65689 RL 65684 >Cf_Contig960 | | 1 to 129949 Length = 129949 Score = 34.7 bits (78), Expect = 0.25 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 V L+D PGH + +++D ++ + D + G+Q QS L + L+ LNK Sbjct: 116836 VNLIDTPGHVDFTVEVERAMRVVDGVVALFDASAGVQAQSYTVLQQSRKFHVPLLAFLNK 117015 Query: 148 ID 149 +D Sbjct: 117016 MD 117021 >Cf_Contig1059 | | 1 to 41438 Length = 41438 Score = 33.9 bits (76), Expect = 0.42 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L + VV +NK Sbjct: 40449 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALTERIRPVVFINK 40270 Query: 148 ID 149 +D Sbjct: 40269 VD 40264 >Cf_Contig837 | | 1 to 88202 Length = 88202 Score = 30.0 bits (66), Expect = 6.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 545 TPALKKRARAGRGEATRQEESAERSEPSQH 574 +P L+++ R RGE QE S+ R+ QH Sbjct: 85079 SPQLRRKGRGQRGEDAHQESSSRRTSRQQH 84990 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,860,443 Number of Sequences: 1089 Number of extensions: 336099 Number of successful extensions: 1742 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 28 Number of HSP's that attempted gapping in prelim test: 1530 Number of HSP's gapped (non-prelim): 426 length of query: 596 length of database: 12,349,441 effective HSP length: 107 effective length of query: 489 effective length of database: 12,232,918 effective search space: 5981896902 effective search space used: 5981896902 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)