TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848312|gb|ADNL01002291.1| Astrammina rara contig02735, who...    26   2.3  
gi|330847428|gb|ADNL01003175.1| Astrammina rara contig03184, who...    25   2.9  
gi|330847500|gb|ADNL01003103.1| Astrammina rara contig02057, who...    24   6.6  
gi|330849410|gb|ADNL01001193.1| Astrammina rara contig01398, who...    24   6.6  

>gi|330848312|gb|ADNL01002291.1| Astrammina rara contig02735, whole
           genome shotgun sequence
          Length = 956

 Score = 25.8 bits (55), Expect = 2.3
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 536 LSPESKKILTPALKK 550
           LSP++KKILTP L K
Sbjct: 538 LSPKTKKILTPLLSK 494


>gi|330847428|gb|ADNL01003175.1| Astrammina rara contig03184, whole
            genome shotgun sequence
          Length = 1498

 Score = 25.4 bits (54), Expect = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 408  RQQWALVEFEKPVTCPRLCLVIGSR 432
            R  WA+ EF++ V    LC + G+R
Sbjct: 1144 RGAWAVCEFDRGVCTASLCTLYGNR 1218


>gi|330847500|gb|ADNL01003103.1| Astrammina rara contig02057, whole
           genome shotgun sequence
          Length = 235

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 545 TPALKKRARAGRGEATRQEESAERSEPSQHVVLSLT 580
           TPA+ +  R  R  + R+    +R +PS   +L L+
Sbjct: 235 TPAISRPGRRTRSASRRRRSLRDRFDPSS*EILKLS 128


>gi|330849410|gb|ADNL01001193.1| Astrammina rara contig01398, whole
           genome shotgun sequence
          Length = 357

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 443 RLAFHGILLHGLEDRNYADS-FLPRLKVYKLKHKHGLVERAMDDYSVIGRSLFKKETNIQ 501
           R+A  G +LH  +   +    F+P+L   +L+H+  LV R +    +  R L  ++T++ 
Sbjct: 160 RVAVKGKVLHLRDTGEHVHGQFIPQLSAARLEHEKNLV-RTLGVLGLWPRRLALRQTSLD 336

Query: 502 LFV 504
            ++
Sbjct: 337 SYL 345


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 817,469
Number of Sequences: 3231
Number of extensions: 9642
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 596
length of database: 483,365
effective HSP length: 79
effective length of query: 517
effective length of database: 228,116
effective search space: 117935972
effective search space used: 117935972
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)