TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325181502|emb|FR824062.1| Albugo laibachii Nc14, genomic cont... 92 1e-18 gi|325188185|emb|FR824211.1| Albugo laibachii Nc14, genomic cont... 69 8e-12 gi|325180465|emb|FR824052.1| Albugo laibachii Nc14, genomic cont... 61 2e-09 gi|325183031|emb|FR824081.1| Albugo laibachii Nc14, genomic cont... 42 0.001 gi|325184111|emb|FR824098.1| Albugo laibachii Nc14, genomic cont... 41 0.003 gi|325184719|emb|FR824111.1| Albugo laibachii Nc14, genomic cont... 41 0.003 gi|325186025|emb|FR824142.1| Albugo laibachii Nc14, genomic cont... 41 0.003 gi|325190995|emb|FR824346.1| Albugo laibachii Nc14, genomic cont... 40 0.005 gi|325191291|emb|FR824390.1| Albugo laibachii Nc14, genomic cont... 34 0.28 gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic cont... 33 0.47 gi|325190899|emb|FR824340.1| Albugo laibachii Nc14, genomic cont... 33 0.47 gi|325190975|emb|FR824344.1| Albugo laibachii Nc14, genomic cont... 33 0.47 gi|325182478|emb|FR824073.1| Albugo laibachii Nc14, genomic cont... 32 1.8 gi|325186899|emb|FR824168.1| Albugo laibachii Nc14, genomic cont... 31 2.3 gi|325182330|emb|FR824071.1| Albugo laibachii Nc14, genomic cont... 29 8.9 gi|325189989|emb|FR824287.1| Albugo laibachii Nc14, genomic cont... 29 8.9 >gi|325181502|emb|FR824062.1| Albugo laibachii Nc14, genomic contig CONTIG_17_NC14_v4_199494_229 Length = 199494 Score = 91.7 bits (226), Expect = 1e-18 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 7/230 (3%) Frame = +3 Query: 91 VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKID 149 VDCPGHA ++ +I GA +D +LV+ G Q+ E +++ Q+ LVV LNK+D Sbjct: 130716 VDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQVGVPALVVFLNKVD 130895 Query: 150 LLPEGKRQAAIDKMTKKMQKTLENTKFRGA--PIIPVXXXXXXXXXXXXXXXXXIPELIE 207 + + + ++ + ++++ L+ F PII + +L+E Sbjct: 130896 QVDD---EELLELVEMEIRELLDLYDFPSEEIPIIRGSALAAVEGRDHPIGRDAVLQLVE 131066 Query: 208 LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK---VV 264 + + I P RD PFLM V+ FSI G+GTV++G + G I+ GD VE+ ++ Sbjct: 131067 HVDNYIPDPVRDFEKPFLMPVEDVFSIAGRGTVVSGRVEHGVINAGDEVELVGIRSTPTK 131246 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERG-LVCAPESLHTVH 313 ++MF + GD +G+ + + RG +VC P S H H Sbjct: 131247 TTCTGVEMFKKQLDRGQAGDNVGLLLRGLKRDDVMRGQVVCKPGS-HVPH 131393 >gi|325188185|emb|FR824211.1| Albugo laibachii Nc14, genomic contig CONTIG_166_NC14_v4_56190_229 Length = 56190 Score = 69.3 bits (168), Expect = 8e-12 Identities = 67/282 (23%), Positives = 109/282 (38%), Gaps = 13/282 (4%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F T++D PGH Sbjct: 3564 DKLKAERERGITIDIALWKFE-------------------------GCCHSFTVIDAPGH 3668 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +L I ++K QT+ L+ + +++VV +NK Sbjct: 3669 RDFIKNMITGTSQADASILCIASGVGEFEAGISKEGQTRE-HALLAFTLGVKQMVVAVNK 3845 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVXXXXXXXXXXXXXXXXXI--P 203 +D Q+ D++ ++ L ++ +IP+ P Sbjct: 3846 MDDASVKYSQSRFDEIVTEVGTYLTKIGYKANKCTMIPISGWCGDNMIEKSSNMPWYKGP 4025 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 L+E L + P R P + + + I G GTV G + +G + G V + + Sbjct: 4026 TLLEALDKLVP-PKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPVGL 4202 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 +VKS++M H +T A GD +G V K L RG V + Sbjct: 4203 TTEVKSVEMHHESLTEATPGDNVGFNVKNVAVKDLRRGFVAS 4328 >gi|325180465|emb|FR824052.1| Albugo laibachii Nc14, genomic contig CONTIG_7_NC14_v4_241751_227 Length = 241751 Score = 61.2 bits (147), Expect = 2e-09 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 10/181 (5%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVL 145 V+ VDCPGH L+ T++ GA ++D +L++ + Q Q++E L +I Q ++++ Sbjct: 139259 VSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQ 139438 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205 NK+DL+ E A ++++K + T APIIP+ I + Sbjct: 139439 NKVDLIKEDVAVA----QHEQIKKFVAGTVAHDAPIIPI----------SAVLKYNIDVV 139576 Query: 206 IELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSVE 257 E + I IP RD + + V F + +G V G+IL G + + D +E Sbjct: 139577 CEYIVRNIPIPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILQGVLRVNDEIE 139756 Query: 258 I 258 + Sbjct: 139757 V 139759 >gi|325183031|emb|FR824081.1| Albugo laibachii Nc14, genomic contig CONTIG_36_NC14_v4_137019_239 Length = 137019 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = +2 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G + D+ +LV+D+ G++ Q+ E L + + +V LNKID Sbjct: 44549 VIDTPGHESFTNLRSRGTSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAPFIVALNKID 44728 >gi|325184111|emb|FR824098.1| Albugo laibachii Nc14, genomic contig CONTIG_53_NC14_v4_112287_155 Length = 112287 Score = 40.8 bits (94), Expect = 0.003 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 16/214 (7%) Frame = +3 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQ 139 T++D PGH + + +I GA D+ +LVI KG QT+ L+ + Sbjct: 13746 TILDAPGHKTYVPNMIQGASQADIGILVISARKGEFETGFERGGQTRE-HALLAKTLGIN 13922 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF---RGAPIIPVXXXXXXXXXXXX 196 KLVVV+NK+D + + D+ K++ L + F R +P+ Sbjct: 13923 KLVVVINKMDEADWAEER--FDECVTKLRPFLRSCGFAVKRDLSFVPLSGLLGHNVKVRV 14096 Query: 197 XXXXXI----PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISL 252 LI L + + I RD P + + + + +GTV G + SG + Sbjct: 14097 DKKMAPWYEGDSLIAHLDT-MHILGRDALAPLRVPILDRY--QERGTVAMGKVESGILKS 14267 Query: 253 GDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRL 286 G + + V + + PI +A G+ + Sbjct: 14268 GHKILLMPTHTTVVVNQVYINDQPIRTAKPGENV 14369 >gi|325184719|emb|FR824111.1| Albugo laibachii Nc14, genomic contig CONTIG_66_NC14_v4_99192_244 Length = 99192 Score = 40.8 bits (94), Expect = 0.003 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 11/138 (7%) Frame = +3 Query: 43 RERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGHASLIRT 102 R RG+T+D+G F VTL+D PGH I Sbjct: 31632 RARGVTMDIGLKFFETASKC-------------------------VTLLDAPGHKDFIPK 31736 Query: 103 IIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQKLVVVLNKIDLLPE 153 +I GA D+ +LV+ + G QT+ L+I + +++V +NK+D + Sbjct: 31737 MITGATQADVALLVVPASTGAFEGAFENSGQTKE-HTLLIKSLGVTQIIVAINKMDTIAW 31913 Query: 154 G--KRQAAIDKMTKKMQK 169 + Q+ +D + +Q+ Sbjct: 31914 DPIRYQSIVDSLKTYLQR 31967 >gi|325186025|emb|FR824142.1| Albugo laibachii Nc14, genomic contig CONTIG_97_NC14_v4_80307_117 Length = 80307 Score = 40.8 bits (94), Expect = 0.003 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 16/214 (7%) Frame = +1 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM---------QTQSAECLVIGQIACQ 139 T++D PGH + + +I GA D+ +LVI KG QT+ L+ + Sbjct: 13528 TILDAPGHKTYVPNMIQGASQADIGILVISARKGEFETGFERGGQTRE-HALLAKTLGIN 13704 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF---RGAPIIPVXXXXXXXXXXXX 196 KLVVV+NK+D + + D+ K++ L + F R +P+ Sbjct: 13705 KLVVVINKMDEADWAEER--FDECVTKLRPFLRSCGFAVKRDLSFVPLSGLLGHNVKVRV 13878 Query: 197 XXXXXI----PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISL 252 LI L + + I RD P + + + + +GTV G + SG + Sbjct: 13879 DKKMAPWYEGDSLIAHLDT-MHILGRDALAPLRVPILDRY--QERGTVAMGKVESGILKS 14049 Query: 253 GDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRL 286 G + + V + + PI +A G+ + Sbjct: 14050 GHKILLMPTHTTVVVNQVYINDQPIRTAKPGENV 14151 >gi|325190995|emb|FR824346.1| Albugo laibachii Nc14, genomic contig CONTIG_301_NC14_v4_31381_247 Length = 31381 Score = 40.0 bits (92), Expect = 0.005 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 6/147 (4%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + +VD PGHA + ++D ++LV+D T+G +Q+ L K +VV+NK Sbjct: 2693 LNIVDTPGHADFGGEVERILSMVDGVVLVVDATEGPMSQTKFVLTKALQRGLKPLVVINK 2514 Query: 148 IDLLP---EGKRQAAIDKMTKKMQKTLENTKFRGAPIIPV---XXXXXXXXXXXXXXXXX 201 +D G + + M ++ E +F PII Sbjct: 2513 VDRETSRLNGDVENELFDMFMALEANDEQLEF---PIIYASARQGWAVREVDETKEKRES 2343 Query: 202 IPELIELLTSQISIPTRDPSGPFLMSV 228 + L++ + + + PT DP PF MSV Sbjct: 2342 MKVLLDEIIAYVPPPTADPKAPFAMSV 2262 >gi|325191291|emb|FR824390.1| Albugo laibachii Nc14, genomic contig CONTIG_345_NC14_v4_25966_356 Length = 25966 Score = 34.3 bits (77), Expect = 0.28 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + LVD PGH + +I D +++ID +G Q+ L I + +V+NK Sbjct: 20820 INLVDSPGHVDFSFDVSTAVRICDGALVLIDAVEGFCPQTHAVLRQAWIEGTRPCLVINK 20999 Query: 148 IDLL 151 ID L Sbjct: 21000 IDRL 21011 >gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic contig CONTIG_3_NC14_v4_366484_228 Length = 366484 Score = 33.5 bits (75), Expect = 0.47 Identities = 28/113 (24%), Positives = 45/113 (39%) Frame = -3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D PQ R+RGIT+ G + S P RS+ V ++D PGH Sbjct: 171614 DYMPQERQRGITI--GAAAISFPW----RST-------------------NVNVIDTPGH 171510 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 + +++D + VID G++ Q+ +V +NK+D Sbjct: 171509 VDFTVEVERAVRVLDGSIAVIDGVAGVEAQTETVWEQANRYAVPRIVFINKMD 171351 >gi|325190899|emb|FR824340.1| Albugo laibachii Nc14, genomic contig CONTIG_295_NC14_v4_31828_130 Length = 31828 Score = 33.5 bits (75), Expect = 0.47 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L K V+++NK Sbjct: 4509 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCIEGVCVQTETVLRQAISERVKPVLMVNK 4688 Query: 148 ID 149 +D Sbjct: 4689 VD 4694 >gi|325190975|emb|FR824344.1| Albugo laibachii Nc14, genomic contig CONTIG_299_NC14_v4_31534_143 Length = 31534 Score = 33.5 bits (75), Expect = 0.47 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L K V+++NK Sbjct: 2404 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCIEGVCVQTETVLRQAISERVKPVLMVNK 2583 Query: 148 ID 149 +D Sbjct: 2584 VD 2589 >gi|325182478|emb|FR824073.1| Albugo laibachii Nc14, genomic contig CONTIG_28_NC14_v4_152595_242 Length = 152595 Score = 31.6 bits (70), Expect = 1.8 Identities = 14/63 (22%), Positives = 32/63 (50%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + + ++L++D ++G+Q Q+ + +++ +L K Sbjct: 124025 LNLIDTPGHVDFSYEVHRSLAACEGVLLLVDCSQGIQAQTLATFYAAKKLNMRVLPLLTK 124204 Query: 148 IDL 150 ID+ Sbjct: 124205 IDM 124213 >gi|325186899|emb|FR824168.1| Albugo laibachii Nc14, genomic contig CONTIG_123_NC14_v4_71167_256 Length = 71167 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM 123 + +DCPGH + I QI D +LV+D +G+ Sbjct: 44700 INAMDCPGHVNFKDESIAALQIADGAILVVDAIEGV 44807 >gi|325182330|emb|FR824071.1| Albugo laibachii Nc14, genomic contig CONTIG_26_NC14_v4_158960_243 Length = 158960 Score = 29.3 bits (64), Expect = 8.9 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -1 Query: 411 WALVEFEKPVTCPRLCLVIGSRL-DADIHTNTCRLAFHGILLHG 453 WA ++ P+ +CLVIG+ + +H N+ LA G LL+G Sbjct: 106373 WANRSYKSPLIFATICLVIGNFMYGVALHYNSLWLAILGRLLNG 106242 >gi|325189989|emb|FR824287.1| Albugo laibachii Nc14, genomic contig CONTIG_242_NC14_v4_40326_229 Length = 40326 Score = 29.3 bits (64), Expect = 8.9 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = -1 Query: 266 KVKSMQMFHMPITSAMQGDRLGICV 290 ++ +Q+ H IT+ GDR+G+C+ Sbjct: 26253 RLDQLQLVHSRITATSHGDRIGVCI 26179 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,510,131 Number of Sequences: 3816 Number of extensions: 250468 Number of successful extensions: 1009 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 170 Number of HSP's successfully gapped in prelim test: 45 Number of HSP's that attempted gapping in prelim test: 742 Number of HSP's gapped (non-prelim): 431 length of query: 596 length of database: 10,913,379 effective HSP length: 106 effective length of query: 490 effective length of database: 10,508,883 effective search space: 5149352670 effective search space used: 5149352670 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)