TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000092_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Drosophila melanogaster # Complete (511 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.106 of Sphaeroforma arctica JP610 96 2e-19 supercont1.2498 of Sphaeroforma arctica JP610 65 6e-10 supercont1.1163 of Sphaeroforma arctica JP610 56 2e-07 supercont1.126 of Sphaeroforma arctica JP610 52 5e-06 supercont1.61 of Sphaeroforma arctica JP610 42 0.004 supercont1.4196 of Sphaeroforma arctica JP610 41 0.007 supercont1.114 of Sphaeroforma arctica JP610 41 0.007 supercont1.13 of Sphaeroforma arctica JP610 41 0.009 supercont1.471 of Sphaeroforma arctica JP610 40 0.015 supercont1.212 of Sphaeroforma arctica JP610 35 0.48 supercont1.299 of Sphaeroforma arctica JP610 32 4.1 >supercont1.106 of Sphaeroforma arctica JP610 Length = 154368 Score = 96.3 bits (238), Expect = 2e-19 Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 38/135 (28%) Frame = -2 Query: 65 EQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAE-------------- 110 +++QFT VDCPGHASLI+TIIGGAQIID+MLLVVD KG Q QTAE Sbjct: 132851 DEVQFTLVDCPGHASLIKTIIGGAQIIDVMLLVVDINKGIQAQTAEVLSYISFISIL*DP 132672 Query: 111 ----------------------CLIIGELLQKKLIVVINKIDVYPENQRASKLEK-LRLR 147 C+++GE+ +++VV+NKID+ PE +RA K+ K + + Sbjct: 132671 PCAVSLFIGL*LGLISTVLPLQCIVVGEITCDRMVVVLNKIDLVPEEERAKKIAKVMDVE 132492 Query: 148 LAKTLEA-TTFGGQV 161 EA T GG V Sbjct: 132491 YISNSEAMTVLGGYV 132447 Score = 80.1 bits (196), Expect = 1e-14 Identities = 37/59 (62%), Positives = 46/59 (77%) Frame = -1 Query: 3 INFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAHL 61 +N N+G+LGHVDSGKT+L K LS+++STA+FD NPQS RGITLDLGFS P+ L Sbjct: 137376 LNINVGVLGHVDSGKTSLCKVLSTVASTASFDNNPQSQARGITLDLGFSSFKRKTPSQL 137200 Score = 70.1 bits (170), Expect = 1e-11 Identities = 36/73 (49%), Positives = 48/73 (65%) Frame = -3 Query: 356 IYALLQFESPVLSPPHSTLIASKLDMDVHSTSCRLAFWGRIAWQTHSSKYFQEELPKLRI 415 IY LL P+L PP S IAS+LD D++S + RLAF GRI+ S KY + LP+L I Sbjct: 130936 IYVLLNLAQPLLCPPDSLYIASRLDADINSKAVRLAFHGRISSLMASPKYKADTLPRLLI 130757 Query: 416 FKRKQKVGSIQRV 428 +KRK + G++ RV Sbjct: 130756 YKRKFREGTVDRV 130718 Score = 64.7 bits (156), Expect = 6e-10 Identities = 31/63 (49%), Positives = 45/63 (71%) Frame = -1 Query: 215 GTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERGI 274 GT+L G V+ + +E+P+L ++KVKS+QMFR+ V + DR + VTQF+AKLLERG Sbjct: 131733 GTVLSGSVKAGDTVEIPSLKIKKKVKSLQMFRQPVDGLAQSDRGAILVTQFDAKLLERG* 131554 Query: 275 ITQ 277 + Q Sbjct: 131553 VCQ 131545 Score = 47.8 bits (112), Expect = 7e-05 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Frame = -1 Query: 279 GYLKPIYAVCLQFKPIRYYKEVIKSMRKMHISVGHNTVMANVTLFRDTD------GTTST 332 G + YA+ +R YK +KS K H+SVGH TVMA F D G++ Sbjct: 131346 GSIPTAYAMICTANRVRIYKPELKSGTKFHVSVGHQTVMAEAQFFGIVDDGGTDEGSSGD 131167 Query: 333 FQLDKEYEYMEDVQPAEVQ 351 F D++Y ++ + A Q Sbjct: 131166 FTFDRDYIHLANYAEASTQ 131110 Score = 37.4 bits (85), Expect = 0.098 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = -3 Query: 169 LQGTHIAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTG 215 L H E + L E+ +R A +DHCF IKGQGTV TG Sbjct: 132037 LLNQHFYESLQGLEESLSDLKRPQAAHFLFAIDHCFFIKGQGTVLTG 131897 >supercont1.2498 of Sphaeroforma arctica JP610 Length = 6230 Score = 64.7 bits (156), Expect = 6e-10 Identities = 85/340 (25%), Positives = 126/340 (37%), Gaps = 73/340 (21%) Frame = -3 Query: 6 NIGLLGHVDSGKTTL----------------------AKALSSISSTAAF--DKNPQSVE 41 +I + GHVD+GK+T A L S AF D+ E Sbjct: 3096 SIVICGHVDAGKSTTTGHLIFALGGIPEREMQKLKEEATRLGKGSFAFAFYMDRQKDERE 2917 Query: 42 RGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQ 101 RG+T+ +T +D PGH I+ +I GA D+ LL+V + Sbjct: 2916 RGVTIACTTKEFFTPTK---------HYTVIDAPGHRDFIKNMITGASQADVALLMVPSD 2764 Query: 102 --------KGK------QTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRL 146 KG Q QT + L+I L K+LIV +NK+D + +++ Sbjct: 2763 GNFSAAIAKGNHKAGEVQGQTRQHALLINLLGVKQLIVGVNKMDCDVAKYGIERYTEIKD 2584 Query: 147 RLAKTLEATTF-----GGQVPICAVSALQG------------------------THIAEL 177 + L + VPI +S G H+ L Sbjct: 2583 EVVHMLTRVGWKKDFVAKSVPIMPISGWCGDNLITKSNNMDWWKGADVLVGKEKVHVDCL 2404 Query: 178 REVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVNNVI-----ELPA 232 + L P R + M + F IKG G V TG + QG V+ + P+ Sbjct: 2403 LDCLEFMVTIPVRTPDLTMRMPLSGAFKIKGVGDVLTGRVEQGTVRPGDECVFLPTHTPS 2224 Query: 233 LGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLER 272 G KV +++M K V +A GD +GL + NAK + R Sbjct: 2223 TGCTGKVFTVEMHHKQVEAAYAGDNVGLNIKGLNAKNMPR 2104 >supercont1.1163 of Sphaeroforma arctica JP610 Length = 21007 Score = 56.2 bits (134), Expect = 2e-07 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 7/137 (5%) Frame = +2 Query: 6 NIGLLGHVDSGKTTLAKAL-----SSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAH 60 N+ ++ HVD GKTTL L + +S D ERGIT+ + Sbjct: 11267 NVAVIAHVDHGKTTLVDQLLGQCGTDVSEDRVMDSINLERERGITI--------MSKNTS 11422 Query: 61 LPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQK 120 + + L F VD PGH + ++D +LLVVDA +G QT ++ + LQ Sbjct: 11423 VIWNDNL-FNIVDTPGHQDFGGEVERVLSMVDGVLLVVDATEGPMAQTK--FVLSKALQN 11593 Query: 121 KL--IVVINKIDVYPEN 135 L +VVINK+ + P N Sbjct: 11594 NLRPLVVINKV*ICPMN 11644 >supercont1.126 of Sphaeroforma arctica JP610 Length = 142854 Score = 51.6 bits (122), Expect = 5e-06 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%) Frame = -2 Query: 121 KLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQ-VPIC---AVSALQGTH--- 173 KL+V INK D+ + + LE + + + +TL + G PI A+ AL+G Sbjct: 102842 KLVVFINKADIVDDEEM---LELVEMEMRETLTEYGYDGDNTPIVRGSALCALEGREDKM 102672 Query: 174 ----IAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIE 229 I EL + E P R+L P M V+ F I G+GTV TG + +GKV + V Sbjct: 102671 GKDAIMELMAAVDEWIPTPVRDLDKPFLMPVEDVFSIAGRGTVVTGRIERGKVCMVRVGR 102492 Query: 230 LPALGEQRKVK 240 + GE +V+ Sbjct: 102491 VCVCGECVQVR 102459 Score = 49.7 bits (117), Expect = 2e-05 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Frame = -1 Query: 34 DKNPQSVERGITLDLGFSGLLVDAPAHLP-QGEQLQFTFVDCPGHASLIRTIIGGAQIID 92 DK P+ ERGIT+ A AH+ + + + +DCPGHA ++ +I GA +D Sbjct: 103971 DKAPEEKERGITI----------ATAHVEYETDNRHYAHIDCPGHADYVKNMITGAAQMD 103822 Query: 93 LMLLVVDAQKGKQTQTAECLIIGE 116 ++VV G+ QT E L++ + Sbjct: 103821 GGIMVVAGTDGQMPQTREHLLLSK 103750 Score = 32.0 bits (71), Expect = 4.1 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -2 Query: 6 NIGLLGHVDSGKTTLAKALS 25 NIG +GHVD GKTTL A++ Sbjct: 104900 NIGTIGHVDHGKTTLTAAIT 104841 >supercont1.61 of Sphaeroforma arctica JP610 Length = 181012 Score = 42.0 bits (97), Expect = 0.004 Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 19/144 (13%) Frame = -2 Query: 6 NIGLLGHVDSGKTTLAKALSS---------ISSTAAFDKNPQSVERGITLDLGFSGL--- 53 N+ ++ HVD GK+TL +L S T D ER IT+ L Sbjct: 9363 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRADEQERAITIKSTAISLYYE 9184 Query: 54 -------LVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQT 106 V H P +D PGH + ++ D L+VVD G Sbjct: 9183 LSDRDMTFVKQETH-PGCNAFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV 9007 Query: 107 QTAECLIIGELLQKKLIVVINKID 130 QT L + K I+++NK+D Sbjct: 9006 QTETVLRQAITERIKPILMMNKMD 8935 >supercont1.4196 of Sphaeroforma arctica JP610 Length = 2652 Score = 41.2 bits (95), Expect = 0.007 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 10/135 (7%) Frame = -2 Query: 6 NIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSV----------ERGITLDLGFSGLLV 55 N+ L+GH+ GKTTL + ++ + +RGI++ LL+ Sbjct: 1166 NVALVGHLHHGKTTLMDCFVEQTHDVVPERGNVHLKYTDFLHIENDRGISIKSSPMTLLM 987 Query: 56 DAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIG 115 + +G+ +D PGH + + ++ D ++VVDA +G T L Sbjct: 986 ENT----KGKSYVINVIDTPGHVNFHDEAVAALRVCDGAVVVVDAVEGVMLSTQRLLKHI 819 Query: 116 ELLQKKLIVVINKID 130 + L + INK+D Sbjct: 818 VSMGLSLTLCINKVD 774 >supercont1.114 of Sphaeroforma arctica JP610 Length = 152309 Score = 41.2 bits (95), Expect = 0.007 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = -3 Query: 65 EQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGK 104 E+ +FT +D PGH S + +I GA D+ +LVV A+KG+ Sbjct: 64263 EKKKFTVLDAPGHKSFVPNMISGAAQADIAILVVSARKGE 64144 >supercont1.13 of Sphaeroforma arctica JP610 Length = 257742 Score = 40.8 bits (94), Expect = 0.009 Identities = 27/74 (36%), Positives = 39/74 (52%) Frame = +1 Query: 6 NIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAHLPQGE 65 NIG +GHV GK+TL KA+S + + + +ER IT+ LG+ A A + + + Sbjct: 185371 NIGTIGHVAHGKSTLVKAISGVQTV----RFKNELERNITIKLGY------ANAKIYKCD 185520 Query: 66 QLQFTFVDCPGHAS 79 LQ DC AS Sbjct: 185521 NLQCPRPDCYTSAS 185562 Score = 39.7 bits (91), Expect = 0.020 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = +3 Query: 70 TFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKG-KQTQTAECL 112 +FVDCPGH L+ T++ GA ++D LL++ + Q QT+E L Sbjct: 187623 SFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL 187754 >supercont1.471 of Sphaeroforma arctica JP610 Length = 70051 Score = 40.0 bits (92), Expect = 0.015 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 14/139 (10%) Frame = -3 Query: 6 NIGLLGHVDSGKTTLAKALSSISST--------------AAFDKNPQSVERGITLDLGFS 51 NIG+ H+DSGKTTL + + + A D E+GIT Sbjct: 69317 NIGISAHIDSGKTTLTERILYYTGRIDAIHEVRGKDGVGAKMDSMDLEREKGIT------ 69156 Query: 52 GLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAEC 111 + + A + +D PGH + +++D +LV+ + G Q+QT Sbjct: 69155 ---IQSAATYTKWRDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCSVGGVQSQTLTV 68985 Query: 112 LIIGELLQKKLIVVINKID 130 + I +NK+D Sbjct: 68984 DRQMKRYDVPAICFVNKLD 68928 >supercont1.212 of Sphaeroforma arctica JP610 Length = 112783 Score = 35.0 bits (79), Expect = 0.48 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +3 Query: 68 QFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQT 108 + TF+D PGH + GA+ D+ +LVV A +G Q QT Sbjct: 11412 EITFLDTPGHEAFTDMRKRGAECTDIAILVVAATEGCQAQT 11534 >supercont1.299 of Sphaeroforma arctica JP610 Length = 92690 Score = 32.0 bits (71), Expect = 4.1 Identities = 15/60 (25%), Positives = 35/60 (58%) Frame = -3 Query: 79 SLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVINKIDVYPENQRA 138 S + T+ ++++ LL A +G+Q +A C I+ + +++ +V +++ V+ EN+ A Sbjct: 78540 SELATL*SLGDLVEMSLLGTRACRGRQKNSAVCYIMSKDYRRQQKIVTSRVHVFTENETA 78361 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.320 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,197,146 Number of Sequences: 15618 Number of extensions: 932326 Number of successful extensions: 3262 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 666 Number of HSP's successfully gapped in prelim test: 156 Number of HSP's that attempted gapping in prelim test: 2312 Number of HSP's gapped (non-prelim): 1471 length of query: 511 length of database: 40,529,447 effective HSP length: 114 effective length of query: 397 effective length of database: 38,748,995 effective search space: 15383351015 effective search space used: 15383351015 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 68 (30.8 bits)