TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000092_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Drosophila melanogaster # Complete (511 letters) Database: P.polycephalum/genome.fa 297,657 sequences; 319,018,052 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Contig13961 1573 1573 66 4e-10 Contig14005 2832 2842 61 1e-08 Contig604 29324 51689 56 5e-07 Contig19809 1437 2007 52 5e-06 Contig8472 3981 5847 47 3e-04 Contig12363 2234 2234 46 4e-04 Contig83503 456 456 45 0.001 Contig6188 7064 14978 44 0.001 Contig4246 8897 9149 39 0.061 Contig6589 5309 14168 38 0.14 Contig13738 2111 2111 36 0.52 Contig11405 3563 6520 35 0.67 Contig68270 200 200 35 1.2 Contig16533 961 961 32 5.7 >Contig13961 1573 1573 Length = 1573 Score = 66.2 bits (160), Expect = 4e-10 Identities = 30/44 (68%), Positives = 39/44 (88%) Frame = -2 Query: 3 INFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITL 46 +N N+G+LGHVDSGKT+LA+A+S++ STAA DK+P S ERGITL Sbjct: 147 LNVNVGILGHVDSGKTSLARAISTLLSTAALDKSPASQERGITL 16 >Contig14005 2832 2842 Length = 2842 Score = 61.2 bits (147), Expect = 1e-08 Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 2/66 (3%) Frame = -2 Query: 70 TFVDCPGHASLIRTIIGGAQIIDLMLLVVDA-QKGKQTQTAECLIIGELL-QKKLIVVIN 127 +FVDCPGH L+RT++ GA ++D +LVV A QK Q QTAE L++ E++ ++ V N Sbjct: 2799 SFVDCPGHEMLMRTMLNGASVMDTAILVVAADQKVPQPQTAEHLVVAEIMGLPNILAVQN 2620 Query: 128 KIDVYP 133 K+D+ P Sbjct: 2619 KVDLVP 2602 >Contig604 29324 51689 Length = 51689 Score = 55.8 bits (133), Expect = 5e-07 Identities = 83/352 (23%), Positives = 144/352 (40%), Gaps = 24/352 (6%) Frame = -1 Query: 34 DKNPQSVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDL 93 D N + +G T+++G AH + + ++T +D PGH + + +IGGA D+ Sbjct: 1145 DTNEEERAKGKTVEVG--------RAHF-ETKTKRYTILDAPGHKNYVPNMIGGAAQADV 993 Query: 94 MLLVVDAQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLR 145 +LV+ A+KG K QT E ++ + K L+VVINK+D N + ++ Sbjct: 992 AILVISARKGEFETGFEKGGQTREHARLVKTIGVKYLLVVINKMDDPTVNWSKERFDECV 813 Query: 146 LRLAKTLEATTFGGQVPICAV--SALQGTH-IAELREVLREAYFQP------------QR 190 +L+ L++T + + I + S G + + + Y P +R Sbjct: 812 DKLSPFLKSTGYNVKKDIVFIPMSGYTGANMLVHTTPQVCPWYDGPTMLSYLDNLPPVER 633 Query: 191 NLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVT 250 PL + V F +G TV G + G V V I L +V I + Sbjct: 632 KADAPLRIPVVDSFKDRGL-TVIMGKVEAGTVAVGQTIFLMPGKVALEVVGINTETNALQ 456 Query: 251 SASMGDRIGLCVTQFNAKLLERGIITQPGYLKPIYAVCL-QFKPIRYYKEVIKSMRKMHI 309 A G+ I + V + G++ L P CL +F+ + E+ S K + Sbjct: 455 RAKPGENIKITVRGIEEGNVSPGLVLCDNNLVP----CLTEFEVMLAVHEL--SKEKSLL 294 Query: 310 SVGHNTVMANVTLFRDTDGTTSTFQLDKEYEYMEDVQPAEVQHNDVIYALLQ 361 + G+ V+ T + + Q+D + +P V+ N V+ LQ Sbjct: 293 TAGYEAVLHLHTCVEECTVSELVAQVDTKTNQESKKKPTFVKSNSVVRCRLQ 138 >Contig19809 1437 2007 Length = 2007 Score = 52.4 bits (124), Expect = 5e-06 Identities = 24/46 (52%), Positives = 30/46 (65%) Frame = -1 Query: 180 VLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVN 225 +L + QPQR+ PL DHCF IKGQGTV TGT+L+G + N Sbjct: 1911 ILAQKVAQPQRSGEGPLLFEFDHCFPIKGQGTVLTGTVLKGSISGN 1774 >Contig8472 3981 5847 Length = 5847 Score = 46.6 bits (109), Expect = 3e-04 Identities = 25/63 (39%), Positives = 34/63 (53%) Frame = +1 Query: 68 QFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVIN 127 Q TF+D PGH + G + D+ LLVV A G Q QT E + + + ++IV I Sbjct: 5044 QITFMDTPGHEAFTSLRERGVKTTDIALLVVAADSGVQEQTIEAIRVAKASGVQMIVCIT 5223 Query: 128 KID 130 KID Sbjct: 5224 KID 5232 >Contig12363 2234 2234 Length = 2234 Score = 46.2 bits (108), Expect = 4e-04 Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 14/191 (7%) Frame = -1 Query: 99 DAQKGKQTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTF 157 +A K QT E ++ L K++IV INK+D N ++ +++ + ++ + Sbjct: 998 EAGIAKTGQTREHALLAYTLGVKQMIVAINKMDEKSVNWSQARYDEIVKETSSFVKKIGY 819 Query: 158 GGQ-VPICAVSALQGTHIAE------------LREVLREAYFQPQRNLADPLFMYVDHCF 204 + + +S G ++ E L E L + +P+R PL + + + Sbjct: 818 NPEKIAFVPISGWNGDNMLEKSANLPWYKGPTLLEAL-DQITEPKRPTDKPLRVPLQDVY 642 Query: 205 GIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQ 264 I G GTV G + G ++ ++ +VKS++M + A GD +G V Sbjct: 641 KIGGIGTVPVGRVETGILKPGMIVTFAPANLSTEVKSVEMHHVALPEAVPGDNVGFNVKN 462 Query: 265 FNAKLLERGII 275 + K + RG++ Sbjct: 461 LSVKDIRRGMV 429 Score = 34.7 bits (78), Expect = 1.2 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 24/108 (22%) Frame = -2 Query: 4 NFNIGLLGHVDSGKTTLA------------KALSSISSTAA------------FDKNPQS 39 + NI ++GHVD+GK+T + + AA DK Sbjct: 1453 HINIVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKSE 1274 Query: 40 VERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGG 87 ERGIT+D+ + + T +D PGH I+ +I G Sbjct: 1273 RERGITIDIALWKF---------ETAKYYITIIDAPGHRDFIKNMITG 1157 >Contig83503 456 456 Length = 456 Score = 44.7 bits (104), Expect = 0.001 Identities = 21/51 (41%), Positives = 34/51 (66%) Frame = +3 Query: 333 FQLDKEYEYMEDVQPAEVQHNDVIYALLQFESPVLSPPHSTLIASKLDMDV 383 F ++YE+ME + P Q ++ALL FE P+++P S +IAS+LD+D+ Sbjct: 291 FNSGEDYEFMEALPPGAPQ----VFALLTFEKPIIAPLGSIVIASRLDIDI 431 >Contig6188 7064 14978 Length = 14978 Score = 44.3 bits (103), Expect = 0.001 Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 27/115 (23%) Frame = -3 Query: 70 TFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKG-------------------------- 103 +FVDCPGH L+ T++ GA ++D LL++ + G Sbjct: 4983 SFVDCPGHDILMATMLNGAAVMDAALLLIAGELGVRRDIRTRKEKLHLTQY*YYAGNESC 4804 Query: 104 KQTQTAECLIIGELLQKKLIVVI-NKIDVYPENQRASKLEKLRLRLAKTLEATTF 157 Q QT+E L E+++ K I+++ NKID+ + + + +++ L+ K L + + Sbjct: 4803 PQPQTSEHLAAIEIMKLKHIIILQNKIDLIKDTAASEQYQQI-LKFIKGLSSPCY 4642 >Contig4246 8897 9149 Length = 9149 Score = 38.9 bits (89), Expect = 0.061 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +1 Query: 187 QPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIEL 230 QP+R + P M ++ F I G+GTV TG L QG ++V I++ Sbjct: 5449 QPKRPIDKPFLMPIEDIFAITGRGTVVTGRLEQGTLKVGEQIQV 5580 Score = 37.0 bits (84), Expect = 0.23 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 24/117 (20%) Frame = +3 Query: 39 SVERGITLDLGFSGLLVDAPAHLPQG-EQLQFTFVDCPGHASLIRTII-GGAQI------ 90 S+ RGIT+ +H+ E + +DCPGH I+ +I G AQ+ Sbjct: 4641 SIARGITI----------TASHIEYSTENRHYAHIDCPGHQHYIKNMITGAAQV*SCLFS 4790 Query: 91 ---------------IDLMLLVVDAQKGKQTQTAECLIIG-ELLQKKLIVVINKIDV 131 ++ +LVV A G Q QT E +I+ E+ +++ +NK+D+ Sbjct: 4791 ILLSLAHPLFFFVLQMEGAILVVSAPDGPQEQTREHIILSREVGVPHVVIFLNKMDL 4961 >Contig6589 5309 14168 Length = 14168 Score = 37.7 bits (86), Expect = 0.14 Identities = 18/48 (37%), Positives = 31/48 (64%) Frame = +2 Query: 8 GLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLV 55 G++GHV GKT+LA+A+S +++T K +R IT+ LG++ + Sbjct: 10658 GMIGHVAHGKTSLARAISGVTTT----KFSAEKKRNITIKLGYANFKI 10789 >Contig13738 2111 2111 Length = 2111 Score = 35.8 bits (81), Expect = 0.52 Identities = 31/99 (31%), Positives = 44/99 (44%) Frame = +1 Query: 90 IIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLA 149 ++D + L+VDA +G TQT L + IVV+NK+D N RA + E L Sbjct: 19 MVDGVCLLVDANEGPMTQTKFVLTKALSFGLRPIVVLNKMD--RPNARAEETETSLFDLF 192 Query: 150 KTLEATTFGGQVPICAVSALQGTHIAELREVLREAYFQP 188 +L AT P SA +G + L R + P Sbjct: 193 TSLNATDDQLSYPTLYASAKEGDFLYFLFSSSRSPFSFP 309 >Contig11405 3563 6520 Length = 6520 Score = 35.4 bits (80), Expect = 0.67 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Frame = -2 Query: 6 NIGLLGHVDSGKTTLAKAL-----SSISSTAAFDKNPQSVERGITL 46 N+ ++ HVD GKT++ L +S++S D N ERGIT+ Sbjct: 306 NVAIIAHVDHGKTSMVDQLLRQSGASVTSDRVMDNNQLEKERGITI 169 >Contig68270 200 200 Length = 200 Score = 34.7 bits (78), Expect = 1.2 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = -2 Query: 415 IFKRKQKVGSIQRVVNSSEVIVQNLF-KDAKRDLYVGKNVELSTGEKGR 462 IFK K K GSI+RV + + +I ++LF K+ +L+VG ++ G + R Sbjct: 196 IFKIKTKTGSIERVHDPNTLIGKDLFKKETDMNLFVGMKIKKDNGMRER 50 >Contig16533 961 961 Length = 961 Score = 32.3 bits (72), Expect = 5.7 Identities = 22/73 (30%), Positives = 34/73 (46%) Frame = -3 Query: 280 YLKPIYAVCLQFKPIRYYKEVIKSMRKMHISVGHNTVMANVTLFRDTDGTTSTFQLDKEY 339 YL P+ +C+ K I Y K I+ +R + HN N +F T T T Q+DK+ Sbjct: 374 YLAPVIPLCVNIK-IDYLKN-IERVR***VESAHNLATINAVVFMYTGYTQKTDQIDKDK 201 Query: 340 EYMEDVQPAEVQH 352 + V+ + H Sbjct: 200 QSDNQVKNNVLSH 162 Database: P.polycephalum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 319,018,052 Number of sequences in database: 297,657 Lambda K H 0.320 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 159,089,000 Number of Sequences: 297657 Number of extensions: 2163734 Number of successful extensions: 8818 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 8472 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8813 length of query: 511 length of database: 106,339,350 effective HSP length: 118 effective length of query: 393 effective length of database: 71,215,824 effective search space: 27987818832 effective search space used: 27987818832 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 70 (31.6 bits)