TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000092_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Drosophila melanogaster # Complete (511 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338242838|gb|AFNH01001746.1| Gregarina niphandrodes asmbl.254... 78 6e-15 gi|338244959|gb|AFNH01000685.1| Gregarina niphandrodes asmbl.159... 75 7e-14 gi|338242864|gb|AFNH01001733.1| Gregarina niphandrodes asmbl.253... 71 8e-13 gi|338241698|gb|AFNH01002316.1| Gregarina niphandrodes asmbl.306... 55 4e-08 gi|338243594|gb|AFNH01001368.1| Gregarina niphandrodes asmbl.219... 51 1e-06 gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.266... 48 9e-06 gi|338241450|gb|AFNH01002440.1| Gregarina niphandrodes asmbl.318... 30 1.5 gi|338242377|gb|AFNH01001976.1| Gregarina niphandrodes asmbl.275... 30 2.0 gi|338240869|gb|AFNH01002732.1| Gregarina niphandrodes asmbl.345... 29 3.4 gi|338241119|gb|AFNH01002607.1| Gregarina niphandrodes asmbl.333... 28 5.8 >gi|338242838|gb|AFNH01001746.1| Gregarina niphandrodes asmbl.2543, whole genome shotgun sequence Length = 7176 Score = 78.2 bits (191), Expect = 6e-15 Identities = 94/396 (23%), Positives = 156/396 (39%), Gaps = 45/396 (11%) Frame = -3 Query: 4 NFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQS 39 + N+ ++GHVDSGK+T L S DK Sbjct: 3220 HINLVVIGHVDSGKSTTTGHLIYKLGGIDQRTIEKFEKESTEMGKGSFKYAWILDKLKAE 3041 Query: 40 VERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVD 99 ERGIT+D+ + + ++T +D PGH I+ +I G D+ LLVV Sbjct: 3040 RERGITIDIALWKF---------ETPRFEYTVIDAPGHRDFIKNMITGTSQADVALLVVP 2888 Query: 100 AQKG-------KQTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLRLRLAKT 151 A G K+ QT E ++ L ++IV INK+D Q + ++++ ++ Sbjct: 2887 ADIGGFEGAFSKEGQTREHALLAYTLGVSQMIVGINKMDACGYKQ--DRFDEIQKEVSGY 2714 Query: 152 LEATTFG-GQVPICAVSALQGTHIAELRE--------VLREAYFQ---PQRNLADPLFMY 199 L+ + ++ A+S G ++ E L EA + P+R PL + Sbjct: 2713 LKRVGYKVDKIHFVAISGFMGDNMIEKSPNMPWYKGLTLVEALDKMEVPKRPDEKPLRLP 2534 Query: 200 VDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRIG 259 + + I G GTV G + G ++ N + G VKS++M + A GD +G Sbjct: 2533 LQDVYKIGGIGTVPVGRVETGTLKPNMSVCFAPSGVTTDVKSVEMHHVQLEKAIPGDNVG 2354 Query: 260 LCVTQFNAKLLERGIITQPGYLKPIYAVCLQFKPIRYYK-EVIKSMRKMHISVGHNTVMA 318 V + K ++RG + P KP ++ +VI I G+ V+ Sbjct: 2353 FNVKNVSVKDIKRGNVASDAKNDPA-------KPAGAFEAQVIIMNHPGEIKAGYTPVLD 2195 Query: 319 NVTLFRDTDGTTSTFQLDKEYEYMEDVQPAEVQHND 354 T ++DK + D P V++ D Sbjct: 2194 CHTAHIACKFEKLMAKMDKRTNKVTDDAPTVVKNGD 2087 >gi|338244959|gb|AFNH01000685.1| Gregarina niphandrodes asmbl.15994, whole genome shotgun sequence Length = 8241 Score = 74.7 bits (182), Expect = 7e-14 Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 35/259 (13%) Frame = -1 Query: 6 NIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGL------LVDAP- 58 N+G +GHV GK+T+ +ALS + T F KN + ER IT+ LG++ + +P Sbjct: 3015 NVGTIGHVAHGKSTVVRALSGVQ-TVRF-KNEK--ERNITIKLGYANAKLFKCDICPSPG 2848 Query: 59 AHLPQGEQ------------------LQFTFVDCPGHASLIRTIIGGAQIID-LMLLVVD 99 A+ G +FVDCPGH L+ T++ GA ++D +LLV Sbjct: 2847 AYSSHGSGHADEYPCPTCGKGVRRVVRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAG 2668 Query: 100 AQKGKQTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFG 158 + Q QT+E L E+++ + LIV+ NK+++ E Q + E++ K T Sbjct: 2667 NEPCPQPQTSEHLAAVEIMKLRHLIVLQNKVELIKEEQCLVQQEQI-----KDFVKGTAA 2503 Query: 159 GQVPICAVSALQGTHIAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGT------- 211 PI +SA+ ++ + E + P R+ + M V F + G Sbjct: 2502 DNAPIVPISAILKYNMDVVAEYMCSRIAVPVRDFSAKPEMIVIRSFDVNKPGDSIEAMVG 2323 Query: 212 -VCTGTLLQGKVQVNNVIE 229 V G++L+G ++ + IE Sbjct: 2322 GVAGGSILKGVFKLGDAIE 2266 >gi|338242864|gb|AFNH01001733.1| Gregarina niphandrodes asmbl.2531, whole genome shotgun sequence Length = 9575 Score = 71.2 bits (173), Expect = 8e-13 Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 45/304 (14%) Frame = -2 Query: 4 NFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQS 39 + N+ ++GHVDSGK+T L S DK Sbjct: 1786 HINLVVIGHVDSGKSTTTGHLIYKLGGIDQRTIEKFEKESTEMGKGSFKYAWILDKLKAE 1607 Query: 40 VERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVD 99 ERGIT+D+ + + ++T +D PGH I+ +I G D+ LLVV Sbjct: 1606 RERGITIDIALWKF---------ETPRFEYTVIDAPGHRDFIKNMITGTSQADVALLVVP 1454 Query: 100 AQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKT 151 A G K+ QT E L+ L ++IV INK+D Q + ++++ ++ Sbjct: 1453 ADIGGFEGAFSKEGQTREHALLAYTLGVSQMIVGINKMDACGYKQ--DRFDEIQKEVSGY 1280 Query: 152 LEATTFG-GQVPICAVSALQGTHIAE------------LREVLREAYFQPQRNLADPLFM 198 L+ + ++ A+S G ++ E L E L + P+R PL + Sbjct: 1279 LKRVGYKVDKIHFVAISGFMGDNMIEKSPNMPWYKGLTLVEAL-DKMEVPKRPDEKPLRL 1103 Query: 199 YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258 + + I G GTV G + G ++ N + G VKS++M + A GD + Sbjct: 1102 PLQDVYKIGGIGTVPVGRVETGTLKPNMSVCFAPSGVTTDVKSVEMHHVQLEKAIPGDNV 923 Query: 259 GLCV 262 G V Sbjct: 922 GFNV 911 >gi|338241698|gb|AFNH01002316.1| Gregarina niphandrodes asmbl.3063, whole genome shotgun sequence Length = 20465 Score = 55.5 bits (132), Expect = 4e-08 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 32/157 (20%) Frame = +3 Query: 6 NIGLLGHVDSGKTTL------------AKALSSISSTA------------AFDKNPQSVE 41 NI +GHVD+GK+T A+ + A D N + E Sbjct: 5514 NIVFIGHVDAGKSTTCGNILCLTGQVDARTMEKYEKEAIDNNRESWYFAYVMDVNEEERE 5693 Query: 42 RGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQ 101 +GIT ++G +G + + +FT +D PGH S + ++ GA D+ +L++ A+ Sbjct: 5694 KGITTEVGRAGF---------EFKTRRFTILDAPGHKSFVPEMLAGASQADIGVLIISAR 5846 Query: 102 KG-------KQTQTAECLIIGELL-QKKLIVVINKID 130 KG + QT E ++ + L LIV +NK+D Sbjct: 5847 KGEFESGFERGGQTQEHALLAKTLGVNYLIVAVNKMD 5957 >gi|338243594|gb|AFNH01001368.1| Gregarina niphandrodes asmbl.2197, whole genome shotgun sequence Length = 2909 Score = 50.8 bits (120), Expect = 1e-06 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Frame = -3 Query: 9 LLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAHLPQGEQLQ 68 ++GHVD+GKT K L I T +K + + I L+ + + LQ Sbjct: 1890 IMGHVDTGKT---KLLDKIRRTNVGEKEAGGITQQIGATFFPRESLLTQCHKIDRKLNLQ 1720 Query: 69 ---FTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVV 125 +D PGHAS G+ + DL +LVVD G + QT E + + + + +V Sbjct: 1719 VPGLLIIDTPGHASFSNLRKRGSSLCDLAILVVDIMHGLEPQTRESIQMLKQRRCPFVVA 1540 Query: 126 INKID 130 +NK+D Sbjct: 1539 LNKVD 1525 >gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.2669, whole genome shotgun sequence Length = 19534 Score = 47.8 bits (112), Expect = 9e-06 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 10/135 (7%) Frame = +3 Query: 6 NIGLLGHVDSGKTTLAKALSS----ISSTAA-----FDKNPQSVERGITL-DLGFSGLLV 55 N+ ++ HVD GK+TL +L S IS+ AA D +R IT+ G S Sbjct: 7812 NMSVIAHVDHGKSTLTDSLVSKAGIISAKAAGDARFTDTRQDEQDRCITIKSTGISLYFE 7991 Query: 56 DAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIG 115 A E +D PGH + ++ D L+VVDA +G QT L Sbjct: 7992 HQTATDKPAEPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDAVEGVCVQTETVLRQA 8171 Query: 116 ELLQKKLIVVINKID 130 + K ++ +NK+D Sbjct: 8172 LSERVKPVLHMNKVD 8216 >gi|338241450|gb|AFNH01002440.1| Gregarina niphandrodes asmbl.3180, whole genome shotgun sequence Length = 16044 Score = 30.4 bits (67), Expect = 1.5 Identities = 12/48 (25%), Positives = 24/48 (50%) Frame = -2 Query: 138 ASKLEKLRLRLAKTLEATTFGGQVPICAVSALQGTHIAELREVLREAY 185 +S KL +RLA+ F ++ +C ++ ++G H + L E + Sbjct: 7907 SSVTNKLSIRLAQLFRTMLFSSRIRLCKIAVIRGNHFVSNADPLSEPH 7764 >gi|338242377|gb|AFNH01001976.1| Gregarina niphandrodes asmbl.2753, whole genome shotgun sequence Length = 18440 Score = 30.0 bits (66), Expect = 2.0 Identities = 27/90 (30%), Positives = 39/90 (43%) Frame = +1 Query: 174 IAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPAL 233 + E EVLR A Q + LADP + VDH GQ T + V N + E Sbjct: 16537 VCEAVEVLRRARLQRRHGLADP-HLDVDH-----GQVTASEEGTTRRDVDGNRIAE---- 16686 Query: 234 GEQRKVKSIQMFRKNVTSASMGDRIGLCVT 263 +++ + R+ V S M R+ C+T Sbjct: 16687 ------QALLLVRRQVGSQHMQCRLHTCLT 16758 >gi|338240869|gb|AFNH01002732.1| Gregarina niphandrodes asmbl.3451, whole genome shotgun sequence Length = 6710 Score = 29.3 bits (64), Expect = 3.4 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = +2 Query: 298 KEVIKSMRKMHISVGHNTVMAN--VTLFRDTDGTTSTFQLDKEYEYMEDVQ--PAEV 350 ++ KS K +GH+ N T T+GTT+T + K+ + EDV P E+ Sbjct: 1562 RQPTKSFDKKRKRLGHSVTSTNGTTTTGTTTNGTTTTSDIQKQLQDAEDVDLLPVEI 1732 >gi|338241119|gb|AFNH01002607.1| Gregarina niphandrodes asmbl.3332, whole genome shotgun sequence Length = 15314 Score = 28.5 bits (62), Expect = 5.8 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 269 LLERGIITQPGYLKPIYAVCLQFKPIRY 296 LLE + TQP KP+ LQFKP+++ Sbjct: 4545 LLESKLATQPLQFKPLQFKPLQFKPLQF 4462 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.320 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,030,503 Number of Sequences: 3680 Number of extensions: 120487 Number of successful extensions: 605 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 232 Number of HSP's successfully gapped in prelim test: 43 Number of HSP's that attempted gapping in prelim test: 347 Number of HSP's gapped (non-prelim): 314 length of query: 511 length of database: 5,120,956 effective HSP length: 99 effective length of query: 412 effective length of database: 4,756,636 effective search space: 1959734032 effective search space used: 1959734032 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)