TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000092_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Drosophila melanogaster # Complete (511 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 345 e-99 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 120 3e-27 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 75 2e-13 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 63 6e-10 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 54 3e-07 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 49 1e-05 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 345 bits (885), Expect(2) = e-99 Identities = 191/469 (40%), Positives = 277/469 (59%), Gaps = 41/469 (8%) Frame = +3 Query: 1 MPINFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPA- 59 +PINFNIG++GHVDSGKT+LAKALS+ STA+ DK+P S ERGITLDLGFS + Sbjct: 4735695 IPINFNIGIMGHVDSGKTSLAKALSTNLSTASLDKSPASQERGITLDLGFSSFQIKKDKL 4735874 Query: 60 ------HLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLI 113 + +Q T VDCPGHASLI+TIIGG+QIID+M LV+D KG QTQTAEC++ Sbjct: 4735875 AENNNNNNDNNNNIQITLVDCPGHASLIKTIIGGSQIIDMMFLVIDIVKGIQTQTAECIV 4736054 Query: 114 IGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQ--VPICAVSA--- 168 IGE+ KK I+++NKID P R K+E++ +L K LE T F +P A Sbjct: 4736055 IGEITCKKGIIILNKIDQIPVESRKEKIEQVSSKLRKALEKTCFKDSLIIPFSATGGSSS 4736234 Query: 169 --------LQGTHIAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQG 220 ++ I L + L P+R L DHCF IKGQGT+ TGT+L+G Sbjct: 4736235 GGGSNSNKIEPIGIDLLTKELLNFINIPKREAKGDLLFEFDHCFQIKGQGTILTGTVLRG 4736414 Query: 221 KVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERGIITQPGY 280 ++VN +I++P L ++KVKS+QMF K + A GDR+G+C+TQ ++ LLERG++ Sbjct: 4736415 SIEVNQIIQIPQLNIEKKVKSMQMFHKPIKKAIQGDRVGVCITQLDSSLLERGLVCSNNS 4736594 Query: 281 LKPIYAVCLQFKPIRYYKEVIKSMRKMHISVGHNTVMANVTLFRDTDGTTSTFQLDKEYE 340 + + + + + +R+YK+ + S ++ HI++GH+TV+ +TLF + F KEY Sbjct: 4736595 IPLLSSALISIEKVRFYKQQVNSKQQFHITIGHSTVIGTITLF--SSNIIEPFNSIKEYI 4736768 Query: 341 YMEDVQPAEV----QHNDVI-----------------YALLQFESPVLSPPHSTLIASKL 379 Y + + + N+ I +AL++F+ P+L P +S +I SKL Sbjct: 4736769 YEDTLHATTINTSSNDNNTINSNNVENKESFYPVGSQFALIKFDHPILCPLNSVVIGSKL 4736948 Query: 380 DMDVHSTSCRLAFWGRIAWQTHSSKYFQEELPKLRIFKRKQKVGSIQRV 428 D+++ ST CR+AF G + + Q KL+I+K K K G ++RV Sbjct: 4736949 DVNLDSTGCRIAFHGNLLEGIDDTNK-QSLFSKLKIYKNKSKQGQVERV 4737092 Score = 87.4 bits (215), Expect = 2e-17 Identities = 75/316 (23%), Positives = 132/316 (41%), Gaps = 44/316 (13%) Frame = -2 Query: 4 NFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQS 39 + NI ++GHVD+GK+T L S DK Sbjct: 2797087 HINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMGKQSFKYAWVMDKLKAE 2796908 Query: 40 VERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVD 99 ERGIT+D+ + + FT +D PGH I+ +I G D +LV+ Sbjct: 2796907 RERGITIDIALWKF---------ETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIA 2796755 Query: 100 AQKG-------KQTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLRLRLAKT 151 + G K QT E ++ L K++IV INK+D N ++ +++ ++ Sbjct: 2796754 SPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEVSSF 2796575 Query: 152 LEATTFGGQ-VPICAVSALQGTHIAELREVLR-----------EAYFQPQRNLADPLFMY 199 ++ + + V +S G ++ E + + +A +P+R PL + Sbjct: 2796574 IKKIGYNPEKVAFVPISGWNGDNMLERSDKMEWYKGPTLLEALDAIVEPKRPHDKPLRIP 2796395 Query: 200 VDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRIG 259 + + I G GTV G + G ++ V+ G +VKS++M + + A GD +G Sbjct: 2796394 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVG 2796215 Query: 260 LCVTQFNAKLLERGII 275 V + K ++RG++ Sbjct: 2796214 FNVKNVSVKEIKRGMV 2796167 Score = 81.3 bits (199), Expect = 2e-15 Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 20/262 (7%) Frame = -3 Query: 34 DKNPQSVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDL 93 DK ERGIT+D+ + + FT +D PGH I+ +I G D Sbjct: 2432946 DKLKAERERGITIDIALWKF---------ETSKYYFTIIDAPGHRDFIKNMITGTSQADC 2432794 Query: 94 MLLVVDAQKG-------KQTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLR 145 +LV+ + G K QT E ++ L K++IV INK+D N ++ +++ Sbjct: 2432793 AVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIV 2432614 Query: 146 LRLAKTLEATTFGGQ-VPICAVSALQGTHIAELREVLR-----------EAYFQPQRNLA 193 ++ ++ + + V +S G ++ E + + +A +P+R Sbjct: 2432613 KEVSSFIKKIGYNPEKVAFVPISGWNGDNMLERSDKMEWYKGPTLLEALDAIVEPKRPHD 2432434 Query: 194 DPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSAS 253 PL + + + I G GTV G + G ++ V+ G +VKS++M + + A Sbjct: 2432433 KPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEAR 2432254 Query: 254 MGDRIGLCVTQFNAKLLERGII 275 GD +G V + K ++RG++ Sbjct: 2432253 PGDNVGFNVKNVSVKEIKRGMV 2432188 Score = 47.8 bits (112), Expect = 2e-05 Identities = 49/180 (27%), Positives = 71/180 (39%), Gaps = 14/180 (7%) Frame = +2 Query: 6 NIGLLGHVDSGKTTLAKALSSISST--------------AAFDKNPQSVERGITLDLGFS 51 NIG+ H+DSGKTTL + + + A D E+GIT+ Sbjct: 2561684 NIGISAHIDSGKTTLTERILYYTGRIKEIHEVRGKDGVGAKMDSMDLEREKGITIQ---- 2561851 Query: 52 GLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAEC 111 A + GE +D PGH + +++D +LV+ G Q+QT Sbjct: 2561852 ----SAATYCKWGEN-HINIIDTPGHVDFTIEVERALRVLDGAVLVMCGVSGVQSQTITV 2562016 Query: 112 LIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQVPICAVSALQG 171 +V INK+D N + +E+LR K L QVPI S L+G Sbjct: 2562017 DRQMRRYNVPRVVFINKLDRTGANP-WNVIEQLR----KKLNLNAIALQVPIGKESNLEG 2562181 Score = 43.9 bits (102), Expect = 3e-04 Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 11/169 (6%) Frame = -2 Query: 6 NIGLLGHVDSGKTT----------LAKALSSI-SSTAAFDKNPQSVERGITLDLGFSGLL 54 NIG++ HVD+GKTT L K + + D ERGIT+ Sbjct: 808981 NIGIIAHVDAGKTTTCERMLYYSGLIKRIGEVHKGDTIMDYMKLERERGITIGA------ 808820 Query: 55 VDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLII 114 A +P + + VD PGH + ++ID + + D G Q Q+ Sbjct: 808819 --ATVTIPWNDH-RINIVDTPGHVDFTVEVERSVRVIDGGVAIFDGVAGVQAQSITVWNQ 808649 Query: 115 GELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQVPI 163 E + I INK+D + S ++K + L A Q P+ Sbjct: 808648 AERYKVPRIAFINKMD-----REGSSIDKTLKMMTDRLGANPLPIQWPL 808517 Score = 38.1 bits (87), Expect(2) = e-99 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +2 Query: 430 NSSEVIVQNLFK-DAKRDLYVGKNVELSTGEKGRIERTFGQTSKVAITFQ 478 N + +I +NLFK D+ ++G V TGE G ++ +FG+T KV I Q Sbjct: 4737191 NENTIIGKNLFKKDSDISSFIGMKVLFETGEIGILDSSFGKTGKVKIQIQ 4737340 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 120 bits (300), Expect = 3e-27 Identities = 106/348 (30%), Positives = 158/348 (45%), Gaps = 32/348 (9%) Frame = -1 Query: 6 NIGLLGHVDSGKTTLAKA---------LSSISSTAAFDKNPQSVERGITLDLGFSGLLVD 56 N+G +GHVD GKTTL A L++ S A DK+P+ RGIT+ Sbjct: 2978678 NVGTIGHVDHGKTTLTAAITKTLSDRGLANFKSYAQIDKSPEEKARGITI---------- 2978529 Query: 57 APAHLP-QGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIG 115 +H+ + + +DCPGH I+ +I GA +D +LVV A G Q QT E +I+ Sbjct: 2978528 TASHIEYESATRHYAHIDCPGHQHYIKNMITGAAQMDGAILVVSAPDGPQEQTREHIILS 2978349 Query: 116 -ELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQ----VPICAVSALQ 170 E+ L+V +NK+D N +E + + + + L F G V A AL Sbjct: 2978348 REVGIPALVVFLNKMD----NADPDLVEIVEMEVRELLSQYGFNGDETPFVKGAAAVALA 2978181 Query: 171 GTH----------IAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQG 220 T+ I EL EVL P R + P M V+ F I G+GTV TG + QG Sbjct: 2978180 ETNETATQYGRKAIDELVEVLDTKIPLPHRAVDKPFLMPVEEVFSISGRGTVATGRIEQG 2978001 Query: 221 KVQVNNVIELPALGEQRK--VKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERG-IITQ 277 ++V + + + K V I+MF K + A G+ +G + + + RG +I++ Sbjct: 2978000 TLKVGEEVAIVGIKPVPKVAVTGIEMFGKLLDFAQAGENVGCLLRGLKREEVLRGEVISK 2977821 Query: 278 PGYLKPIYAVCLQFKPIRYYKEVIKSMRKMHISVGHNTVM----ANVT 321 PG +K +FK Y + RK + G+ ANVT Sbjct: 2977820 PGTIK----ASTKFKAKTYVLTEAEGGRKKGFATGYRPQFFIRTANVT 2977689 Score = 50.8 bits (120), Expect = 3e-06 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 14/139 (10%) Frame = +1 Query: 6 NIGLLGHVDSGKTTLAKALSS----ISSTAAFDKNPQSV-----ERGITLDLGFSGLLVD 56 N+ ++ HVD GKTTL+ +L I+ + D S ERGIT+ L + Sbjct: 1470679 NMSVIAHVDHGKTTLSDSLIQRAGIIADKVSGDMRYMSCRADEQERGITIKSSSVSLHFE 1470858 Query: 57 APAH--LPQG---EQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAEC 111 P LP G + +D PGH + ++ D L+V+D +G QT Sbjct: 1470859 MPKEDKLPAGCTSHEFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCVQTETV 1471038 Query: 112 LIIGELLQKKLIVVINKID 130 L + K ++ +NK+D Sbjct: 1471039 LRQAVAERIKPVLFVNKVD 1471095 Score = 44.3 bits (103), Expect = 2e-04 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 14/132 (10%) Frame = -1 Query: 13 VDSGKTTLAKAL--------SSISSTAAFDK-NPQSVERGITLDLGFSGLLVDAPAH--L 61 VD GKTTL +L +S A + P RGIT+ L + P L Sbjct: 692387 VDHGKTTLTDSLIQRAGIIADKVSGNAGYMSCRPDEQLRGITIKSSSVSLHFEMPKDEKL 692208 Query: 62 PQG---EQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELL 118 P G + +D PGH + ++ D L+V+D +G QT L Sbjct: 692207 PTGCSSHEFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAMAE 692028 Query: 119 QKKLIVVINKID 130 + K ++ +NK+D Sbjct: 692027 RIKPVLFVNKVD 691992 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 74.7 bits (182), Expect = 2e-13 Identities = 57/175 (32%), Positives = 86/175 (49%) Frame = -1 Query: 7 IGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAHLPQGEQ 66 + ++GH+D GKT+L L + ST+ D P IT +G +L++ + + ++ Sbjct: 5861312 VTVVGHIDHGKTSL---LDFLRSTSVVDNEPGR----ITQHIGAFEVLINDRSDAKKAKR 5861154 Query: 67 LQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVI 126 TF+D PGH++ G I D++LLVV A G Q QT E + + ++IVVI Sbjct: 5861153 A-ITFMDTPGHSAFSTMRERGVGITDIVLLVVAADDGVQEQTIEAIKAIKKNDVQVIVVI 5860977 Query: 127 NKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQVPICAVSALQGTHIAELREVL 181 NK+D N K+E L +A GG VP +SA G I L E + Sbjct: 5860976 NKMDKPDANPELVKMELLENGIA----CEGVGGDVPCVEISAKTGMGIQTLEETI 5860824 Score = 59.7 bits (143), Expect = 5e-09 Identities = 81/327 (24%), Positives = 128/327 (39%), Gaps = 29/327 (8%) Frame = +1 Query: 6 NIGLLGHVDSGKTTLAKAL----SSISSTA----AFDKNPQSVERGITLDLGFSGLLVDA 57 N+ ++ HVD GKT+L L +I +T D N ERGIT+ + D Sbjct: 6257011 NVAIIAHVDHGKTSLVDQLLRQSGAIKATEKDERVMDSNALEKERGITIMAKCTSF--DY 6257184 Query: 58 PAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGEL 117 H + VD PGH + ++D ++L+VDA +G QT ++ + Sbjct: 6257185 KNH-------KLNIVDTPGHGDFGGEVERVLSMVDGVVLLVDATEGPMAQTK--FVLSKA 6257337 Query: 118 LQKKL--IVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQVPICAVSALQG---- 171 L + L IVVINK+D R ++E L TL A+ P S QG Sbjct: 6257338 LSQGLRPIVVINKLD--RSTARVDEVENEIFDLFATLGASDEQLNYPTLYASGRQGWAIR 6257511 Query: 172 ------THIAELREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQGKVQVN 225 I L + + E P +P M V + G + TG + GK +V Sbjct: 6257512 SRGDDQKDILPLLDTIVEYVECPNVKPEEPFTMLVTNLESDPFVGRIVTGKIYSGKAKVG 6257691 Query: 226 NVIEL-----PALGEQRKVKSI----QMFRKNVTSASMGDRIGLCVTQFNAKLLERGIIT 276 + + + + K+ I M R + GD +G + F+ + +I Sbjct: 6257692 QPLRVVDMKGNVIEDGSKITKIFCRRAMERIVLEEGEAGDIVG--IAGFSQATVTNSLIA 6257865 Query: 277 QPGYLKPIYAVCLQFKPIRYYKEVIKS 303 + G +PI A+ + + Y E S Sbjct: 6257866 E-GVKEPIKAIPIDPPVLAMYFEANNS 6257943 Score = 29.3 bits (64), Expect = 7.9 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +1 Query: 313 HNTVMANVTLFRDTDGTTSTFQLDKEYE 340 HN ++ +V LF DT+ STF + EYE Sbjct: 4544884 HNLIITDVALF-DTENNNSTFSIFNEYE 4544964 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 62.8 bits (151), Expect = 6e-10 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 10/134 (7%) Frame = -2 Query: 7 IGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVE-RGITLDLGFSGLLVDAPAHLPQG- 64 I +LGHVD+GKT+L L I +T N Q E RGIT +G S + VDA + Sbjct: 1233754 ICILGHVDTGKTSL---LDKIRNT-----NVQGGEARGITQQIGASFIPVDAIKEQTKSF 1233599 Query: 65 -EQLQFTF-------VDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGE 116 E+++ F +D PGH S G+ + DL +LV+D G Q QT E + + Sbjct: 1233598 AEKIKMDFKLPGLLLIDTPGHESFNNLRSRGSGLCDLAILVIDIMHGLQAQTLESINLLR 1233419 Query: 117 LLQKKLIVVINKID 130 + + IV +NK+D Sbjct: 1233418 MRKTPFIVALNKVD 1233377 Score = 50.8 bits (120), Expect = 3e-06 Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 12/137 (8%) Frame = -1 Query: 6 NIGLLGHVDSGKTTLAKALSSISSTAA---------FDKNPQSVERGITLDLGFSGLLVD 56 NI +L HVD GKTTL+ L S + + D ER IT+ LL Sbjct: 2449556 NICVLAHVDHGKTTLSDCLISSNGIISPEMAGKLRYLDFLEDEQEREITMKASAISLLFQ 2449377 Query: 57 APAHLPQG---EQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLI 113 P+ E +D PGH + +I D L++VDA +G QT L Sbjct: 2449376 QPSSSSSSNDKESFLINLIDSPGHVDFSSEVSTAVRITDGALVLVDAVEGVCIQTHAVLK 2449197 Query: 114 IGELLQKKLIVVINKID 130 + K +V+NKID Sbjct: 2449196 QAYQEKVKPCLVLNKID 2449146 Score = 47.8 bits (112), Expect = 2e-05 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 31/158 (19%) Frame = -1 Query: 4 NFNIGLLGHVDSGKTTLAKALSSISSTA------------------------AFDKNPQS 39 + NI LGHVD+GK+TL+ ++ ++ D N + Sbjct: 856583 HLNIVFLGHVDAGKSTLSGSIMVLTGQVDPHTLAKYEREAKENHREGWIYAYIMDTNEEE 856404 Query: 40 VERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVD 99 +G T+++G AH ++ ++T +D PGH + +I GA D+ +LV+ Sbjct: 856403 RTKGKTVEVG--------RAHFETTKK-RYTILDAPGHRLYVPNMIIGAAQADVGILVIS 856251 Query: 100 AQKG------KQTQTAECLIIGELLQ-KKLIVVINKID 130 ++KG + QT E + +++ K L+V +NK+D Sbjct: 856250 SKKGEFEAGVEGGQTIEHARLAKMIGIKYLVVFVNKMD 856137 Score = 30.8 bits (68), Expect = 2.7 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = -3 Query: 6 NIGLLGHVDSGKTTLAKALSSI 27 NIG +GHV GK+T+ KA+S + Sbjct: 1531059 NIGTIGHVAHGKSTVVKAISGV 1530994 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 53.9 bits (128), Expect = 3e-07 Identities = 76/323 (23%), Positives = 127/323 (39%), Gaps = 49/323 (15%) Frame = +3 Query: 11 GHVDSGKTTLAKALSSI-------SSTAAFDKNPQSVERGITLDL-----GFS--GLLVD 56 G+VD+GK+TL L + ++ VE G T + GF G +V+ Sbjct: 1636596 GNVDAGKSTLLGVLKCGVLDDGRGKARLNVFRHRHEVESGRTSSISQEIVGFDSKGKIVN 1636775 Query: 57 --------APAHLPQGEQLQFTFVDCPGHASLIRTIIGG--AQIIDLMLLVVDAQ-KGKQ 105 +P+ + + TFVD GH ++T + G + D ++ V A G Sbjct: 1636776 YNTLHSSLSPSEICESSSKIITFVDLAGHEKYLKTTLFGMTSSSPDYCMIAVGANTMGAT 1636955 Query: 106 TQTAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLA---------------- 149 E L I L + +VI KID PEN A+ + ++ L Sbjct: 1636956 GMCKEHLGIALSLHIPVYIVITKIDRAPENVLAATMTDIKKILRGPGARKLPVVIKNQDD 1637135 Query: 150 KTLEATTFGGQ--VPICAVSALQGTHIAELREVLR--EAYFQPQRNLADPLFMYVDHCFG 205 + A F VPI VS + G ++ LR L A + + P + +D + Sbjct: 1637136 VVVAARNFVSDRVVPIFTVSNVTGENLDLLRMFLNLLPARKEWESLALKPAQLDIDSTWN 1637315 Query: 206 IKGQGTVCTGTLLQGKVQVNNVIELPALGE----QRKVKSIQMFRKNVTSASMGDRIGLC 261 + G GTV +GT+++G + + + Q +VKSI R V G L Sbjct: 1637316 VSGVGTVVSGTVMKGVITAGETLLIGPDDSGNFIQTQVKSIHTKRLPVKHVKAGQTASLA 1637495 Query: 262 VTQFNAKLLERGIITQPGYLKPI 284 + + + + +G++ KP+ Sbjct: 1637496 LKRIKKEQIRKGMVIIHPSAKPV 1637564 Score = 48.5 bits (114), Expect = 1e-05 Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 27/250 (10%) Frame = +3 Query: 6 NIGLLGHVDSGKTTLAKALSSISSTAA------------------------FDKNPQSVE 41 N ++ H+D GKTTL+ L S++ T DK E Sbjct: 641592 NFSIIAHIDHGKTTLSTKLLSLTGTLPKSIYGSGEDSLVQKEKSEERREQYLDKLQVEKE 641771 Query: 42 RGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQ 101 RGIT+ + + G+ +D PGH + LLVVDA Sbjct: 641772 RGITVKAQTCTMKY---RNKEDGKDYLLNLIDTPGHVDFSYEVSRSLMACQGALLVVDAV 641942 Query: 102 KGKQTQTAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQV 161 +G Q QT + ++I VINKID+ + +E+++ L +A F Sbjct: 641943 QGVQAQTMANYYLALDSGLEVIPVINKIDL-----PTADVERVKQELK---DAFGFHPDD 642098 Query: 162 PICAVSALQGTHIAELREVLREAYFQPQRNLADPLFMYVDHCFGI---KGQGTVCTGTLL 218 + VSA G I ++ + + PQ P + F + +G +C ++ Sbjct: 642099 AV-LVSAKTGVGITDILPAVIDRIPPPQEPTKSPKVPFKALLFDSWFDRFRGVICLIKVV 642275 Query: 219 QGKVQVNNVI 228 GKV+ + I Sbjct: 642276 DGKVKKGDSI 642305 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 48.9 bits (115), Expect = 1e-05 Identities = 72/321 (22%), Positives = 131/321 (40%), Gaps = 49/321 (15%) Frame = +2 Query: 4 NFNIGLLGHVDSGK-TTLAKAL-----------------------SSISSTAAFDKNPQS 39 + N+ ++GHVD+GK TT+ L SS D+ + Sbjct: 1140356 HLNMVVIGHVDAGKSTTMGHILFKLGYVDKRTMSKFENESNRMGKSSFHFAWVLDEQEEE 1140535 Query: 40 VERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVD 99 ERG+T+D+ + E + T +D PGH I +I G D+ +L+++ Sbjct: 1140536 RERGVTMDVCVRYF---------ETEHRRITLLDAPGHRDFIPNMISGTTQADVAILLIN 1140688 Query: 100 AQK-----GKQTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLRLRLAKTLE 153 A + + QT E ++ + L +LIV +NK+D +Q S+ + + + L Sbjct: 1140689 ASEFEAGFSAEGQTKEHALLAKSLGIMELIVAVNKMDSIEWDQ--SRYDYIVETIKTFLV 1140862 Query: 154 ATTFGGQ-VPICAVSALQGTHIAELRE--VLR-------------EAYFQPQRNLADPLF 197 F + + +S G ++ + +E +L+ +++ +R L P Sbjct: 1140863 HAKFNEKNIRFIPISGFTGENLIDRQESKLLKWYDSKQPTLIECIDSFSVGERLLNKPFR 1141042 Query: 198 MYVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQ-RKVKSIQMFRKNVTS--ASM 254 M + + +G V G ++ + N L + G +KSI+ R N+ S A Sbjct: 1141043 MNISDVYKSSSKGYVAVGGKIEAGLLGNGDKILISPGNDICTIKSIR--RNNLESEWAVG 1141216 Query: 255 GDRIGLCVTQFNAKLLERGII 275 GD + L + N +L G I Sbjct: 1141217 GDNVDLSLVVENPSILRVGCI 1141279 Score = 35.0 bits (79), Expect = 0.14 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = -3 Query: 72 VDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVINKID 130 +D PGH + + + + D+ ++++DA +G QT + + VVINK+D Sbjct: 571500 LDTPGHPNFLDEVTASIALSDIAVIIIDALEGVMMQTERLIKHAVAEGLSICVVINKMD 571324 Score = 32.0 bits (71), Expect = 1.2 Identities = 21/99 (21%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Frame = -3 Query: 49 GFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQK---GKQ 105 G + L++++ +L G + + G +L+R I ID L ++ ++ G + Sbjct: 3923637 GKNDLIINSDLNLNYGRKYGLIGRNGTGKTTLLRHIASREIGIDNNLSILHVEQEVNGNE 3923458 Query: 106 TQTAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKL 144 T EC++ ++ + +L+ +++ PE+++ + EKL Sbjct: 3923457 TTVIECVLEADVERDRLLKEEKRLNALPESEKNNLSEKL 3923341 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.320 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,211,971 Number of Sequences: 6 Number of extensions: 156472 Number of successful extensions: 784 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 420 Number of HSP's gapped (non-prelim): 598 length of query: 511 length of database: 11,314,357 effective HSP length: 105 effective length of query: 406 effective length of database: 11,313,727 effective search space: 4593373162 effective search space used: 4593373162 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)