TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000092_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Drosophila melanogaster # Complete
         (511 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850477|gb|ADNL01000126.1| Astrammina rara contig00132, who...    27   1.1  
gi|330847609|gb|ADNL01002994.1| Astrammina rara contig00661, who...    25   3.3  
gi|330848744|gb|ADNL01001859.1| Astrammina rara contig02208, who...    24   7.3  
gi|330847719|gb|ADNL01002884.1| Astrammina rara contig01409, who...    23   9.5  

>gi|330850477|gb|ADNL01000126.1| Astrammina rara contig00132, whole
            genome shotgun sequence
          Length = 6126

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 312  GHNTVMANVTLFRDTDGTTSTFQLDKEYEYMEDVQPAEVQHNDVIYALLQFESPVL 367
            G    +  +T F   D   STF L    EY+   Q AE+   DV+ A + +  P+L
Sbjct: 2758 GSKGALHGLTKFSMEDAPPSTFFL----EYVARPQTAEMFFEDVLMACVFYGMPIL 2603


>gi|330847609|gb|ADNL01002994.1| Astrammina rara contig00661, whole
           genome shotgun sequence
          Length = 646

 Score = 25.0 bits (53), Expect = 3.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 7   IGLLGHVDSGKTTLAKALSSI 27
           IGLLG   SGKTTL + ++ +
Sbjct: 189 IGLLGPSGSGKTTLLRIIAGL 251


>gi|330848744|gb|ADNL01001859.1| Astrammina rara contig02208, whole
           genome shotgun sequence
          Length = 457

 Score = 23.9 bits (50), Expect = 7.3
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 422 VGSIQRVVNSSEVIVQNLFKDAKRDLYVGKNVELSTGEKG 461
           +GSI ++ +SSE  + + F++++ +LY   + +  T   G
Sbjct: 271 LGSIIKIQSSSEESMISAFENSRVELYYDNSKKFETTSTG 152


>gi|330847719|gb|ADNL01002884.1| Astrammina rara contig01409, whole
           genome shotgun sequence
          Length = 231

 Score = 23.5 bits (49), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 213 CTGTLLQGKVQVNNVIELPALGE 235
           C G LL G+VQV    +L  LG+
Sbjct: 79  CVGVLLNGQVQVIRHQKLKLLGQ 11


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.320    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 705,305
Number of Sequences: 3231
Number of extensions: 8832
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of query: 511
length of database: 483,365
effective HSP length: 78
effective length of query: 433
effective length of database: 231,347
effective search space: 100173251
effective search space used: 100173251
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)