TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.471 of Sphaeroforma arctica JP610 55 4e-07 supercont1.106 of Sphaeroforma arctica JP610 50 2e-05 supercont1.61 of Sphaeroforma arctica JP610 48 7e-05 supercont1.13 of Sphaeroforma arctica JP610 45 3e-04 supercont1.126 of Sphaeroforma arctica JP610 44 0.001 supercont1.2498 of Sphaeroforma arctica JP610 43 0.002 supercont1.1163 of Sphaeroforma arctica JP610 41 0.007 supercont1.4196 of Sphaeroforma arctica JP610 37 0.12 supercont1.75 of Sphaeroforma arctica JP610 31 6.8 >supercont1.471 of Sphaeroforma arctica JP610 Length = 70051 Score = 55.1 bits (131), Expect = 4e-07 Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGI--RRNTLDL---------GF 63 N+GI H+DSGKTTLT RI L T DA DG+ + +++DL Sbjct: 69317 NIGISAHIDSGKTTLTERI--LYYTGRIDAIHEVRGKDGVGAKMDSMDLEREKGITIQSA 69144 Query: 64 STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 +T T + +ID PGH V A V D A++++ V G+Q QT Sbjct: 69143 ATYTKWRDTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCSVGGVQSQT 68994 >supercont1.106 of Sphaeroforma arctica JP610 Length = 154368 Score = 49.7 bits (117), Expect = 2e-05 Identities = 18/45 (40%), Positives = 32/45 (71%) Frame = -2 Query: 73 RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL 117 + L+DCPGH+ LI+ ++ + + D+ ++++D+ GIQ QTAE L Sbjct: 132842 QFTLVDCPGHASLIKTIIGGAQIIDVMLLVVDINKGIQAQTAEVL 132708 Score = 49.3 bits (116), Expect = 2e-05 Identities = 25/52 (48%), Positives = 37/52 (71%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFST 65 +N+G+LGHVDSGKT+L + ++ + ST++FD + S R TLDLGFS+ Sbjct: 137370 INVGVLGHVDSGKTSLCKVLSTVASTASFDNNPQSQA----RGITLDLGFSS 137227 Score = 47.8 bits (112), Expect = 7e-05 Identities = 25/57 (43%), Positives = 34/57 (59%) Frame = -3 Query: 165 IVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTG 221 I ++L + +F E + +E + + KR + FL AIDHCF IKGQGTVLTG Sbjct: 132052 IPSLTLLNQHFYESLQ-----GLEESLSDLKRPQAAHFLFAIDHCFFIKGQGTVLTG 131897 Score = 36.6 bits (83), Expect = 0.16 Identities = 15/51 (29%), Positives = 30/51 (58%) Frame = -1 Query: 286 GTLKSTKFVLATVEPIQFFRKSINSKSKIHVAVAFETVMAECQFLKEKENG 336 G++ + ++ T ++ ++ + S +K HV+V +TVMAE QF ++G Sbjct: 131346 GSIPTAYAMICTANRVRIYKPELKSGTKFHVSVGHQTVMAEAQFFGIVDDG 131194 >supercont1.61 of Sphaeroforma arctica JP610 Length = 181012 Score = 47.8 bits (112), Expect = 7e-05 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 24/146 (16%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIAE----LGSTSAFDAHATSTTTDGIRR--NTLDLGFSTMTS 68 N+ ++ HVD GK+TLT + + A + T T D R S Sbjct: 9363 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRADEQERAITIKSTAISLYYE 9184 Query: 69 LSGRRLA----------------LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQ 110 LS R + LID PGH V AA V D A+V++D V+G +Q Sbjct: 9183 LSDRDMTFVKQETHPGCNAFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ 9004 Query: 111 PQTAEHLLLASKFCPNRVIIVLNKCD 136 +T + + P I+++NK D Sbjct: 9003 TETVLRQAITERIKP---ILMMNKMD 8935 >supercont1.13 of Sphaeroforma arctica JP610 Length = 257742 Score = 45.4 bits (106), Expect = 3e-04 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 11/84 (13%) Frame = +3 Query: 63 FSTMTSLSG-----RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG----IQPQT 113 ++T+T +G R ++ +DCPGH L+ +L + V D A+++I AG QPQT Sbjct: 187572 YATLT*CAGKYQVMRHVSFVDCPGHDILMATMLNGAAVMDAALLLI---AGNESCPQPQT 187742 Query: 114 AEHLL--LASKFCPNRVIIVLNKC 135 +EHL L S+F N +I LN C Sbjct: 187743 SEHLAGKLNSRF--NHIISGLNSC 187808 >supercont1.126 of Sphaeroforma arctica JP610 Length = 142854 Score = 43.9 bits (102), Expect = 0.001 Identities = 19/51 (37%), Positives = 30/51 (58%) Frame = -1 Query: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASK 122 R A IDCPGH+ ++ ++ + D I+++ G PQT EHLLL+ + Sbjct: 103899 RHYAHIDCPGHADYVKNMITGAAQMDGGIMVVAGTDGQMPQTREHLLLSKQ 103747 Score = 32.3 bits (72), Expect = 3.1 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 14 LNLGILGHVDSGKTTLTRRIAE 35 +N+G +GHVD GKTTLT I + Sbjct: 104903 VNIGTIGHVDHGKTTLTAAITK 104838 >supercont1.2498 of Sphaeroforma arctica JP610 Length = 6230 Score = 42.7 bits (99), Expect = 0.002 Identities = 62/285 (21%), Positives = 104/285 (36%), Gaps = 62/285 (21%) Frame = -3 Query: 14 LNLGILGHVDSGKTTLTRRI-------------------AELGSTSAFDAHATSTTTDGI 54 +++ I GHVD+GK+T T + LG S A D Sbjct: 3099 VSIVICGHVDAGKSTTTGHLIFALGGIPEREMQKLKEEATRLGKGSFAFAFYMDRQKDER 2920 Query: 55 RRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIID--------VV 106 R + + +ID PGH I+ ++ ++ D+A++++ + Sbjct: 2919 ERGVTIACTTKEFFTPTKHYTVIDAPGHRDFIKNMITGASQADVALLMVPSDGNFSAAIA 2740 Query: 107 AG------IQPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXV---------R 151 G +Q QT +H LL + ++I+ +NK D + R Sbjct: 2739 KGNHKAGEVQGQTRQHALLINLLGVKQLIVGVNKMDCDVAKYGIERYTEIKDEVVHMLTR 2560 Query: 152 KGLKSMGVDENSPIVEMS--LADGYF-----------------KEEMLQNLKL-AIESRI 191 G K V ++ PI+ +S D KE++ + L +E + Sbjct: 2559 VGWKKDFVAKSVPIMPISGWCGDNLITKSNNMDWWKGADVLVGKEKVHVDCLLDCLEFMV 2380 Query: 192 FEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEF 236 P R + + + F IKG G VLTG V +G +R E F Sbjct: 2379 TIPVRTPDLTMRMPLSGAFKIKGVGDVLTGRVEQGTVRPGDECVF 2245 >supercont1.1163 of Sphaeroforma arctica JP610 Length = 21007 Score = 41.2 bits (95), Expect = 0.007 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Frame = +2 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRL 74 N+ ++ HVD GKTTL ++ T + + R + +T + Sbjct: 11267 NVAVIAHVDHGKTTLVDQLLGQCGTDVSEDRVMDSINLERERGITIMSKNTSVIWNDNLF 11446 Query: 75 ALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPN--RVIIVL 132 ++D PGH V ++ D ++++D G QT + SK N R ++V+ Sbjct: 11447 NIVDTPGHQDFGGEVERVLSMVDGVLLVVDATEGPMAQTK---FVLSKALQNNLRPLVVI 11617 Query: 133 NK 134 NK Sbjct: 11618 NK 11623 >supercont1.4196 of Sphaeroforma arctica JP610 Length = 2652 Score = 37.0 bits (84), Expect = 0.12 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 16/130 (12%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIAELGS---TSAFDAHATSTTTDGIRRNT-LDLGFSTMTSLS 70 N+ ++GH+ GKTTL E + H T I + + + S MT L Sbjct: 1166 NVALVGHLHHGKTTLMDCFVEQTHDVVPERGNVHLKYTDFLHIENDRGISIKSSPMTLLM 987 Query: 71 GRR------LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT---AEHLL--- 118 + +ID PGH +AA V D A+V++D V G+ T +H++ Sbjct: 986 ENTKGKSYVINVIDTPGHVNFHDEAVAALRVCDGAVVVVDAVEGVMLSTQRLLKHIVSMG 807 Query: 119 LASKFCPNRV 128 L+ C N+V Sbjct: 806 LSLTLCINKV 777 >supercont1.75 of Sphaeroforma arctica JP610 Length = 171072 Score = 31.2 bits (69), Expect = 6.8 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = -3 Query: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLL 118 L +ID PGH S++ D++I++ID++ G H+L Sbjct: 21763 LLIIDTPGHESFSNLRSRGSSLCDLSILVIDLMHGKLVHLVRHIL 21629 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,239,296 Number of Sequences: 15618 Number of extensions: 730956 Number of successful extensions: 2651 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 512 Number of HSP's successfully gapped in prelim test: 113 Number of HSP's that attempted gapping in prelim test: 1963 Number of HSP's gapped (non-prelim): 1038 length of query: 500 length of database: 40,529,447 effective HSP length: 113 effective length of query: 387 effective length of database: 38,764,613 effective search space: 15001905231 effective search space used: 15001905231 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 68 (30.8 bits)