TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_13 162 8e-42 PHYCAscaffold_87 99 1e-20 PHYCAscaffold_41 66 1e-10 PHYCAscaffold_79 62 3e-09 PHYCAscaffold_70 57 5e-08 PHYCAscaffold_60 56 1e-07 PHYCAscaffold_54 53 1e-06 PHYCAscaffold_102 51 5e-06 PHYCAscaffold_27 49 1e-05 PHYCAscaffold_7 49 1e-05 PHYCAscaffold_21 48 4e-05 PHYCAscaffold_11 48 4e-05 PHYCAscaffold_3 45 2e-04 PHYCAscaffold_105 42 0.003 PHYCAscaffold_29 40 0.006 PHYCAscaffold_55 36 0.12 PHYCAscaffold_12 33 0.99 PHYCAscaffold_48 33 1.3 PHYCAscaffold_46 32 2.2 >PHYCAscaffold_13 Length = 1060349 Score = 162 bits (411), Expect(2) = 8e-42 Identities = 126/421 (29%), Positives = 191/421 (45%), Gaps = 34/421 (8%) Frame = -2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRR 73 +N+G+LGHVDSGKT+L R ++ ST+A D H S R TLDLGFS+ + Sbjct: 812251 VNVGVLGHVDSGKTSLVRALSTQLSTAALDKHPQSQQ----RGITLDLGFSSFLLKPSAQ 812084 Query: 74 L------ALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNR 127 + L+DCPGH+ L R +L + D +++ID G+Q QT E LLLA+ Sbjct: 812083 VKPCLQVTLVDCPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLLLATLIAKRS 811904 Query: 128 VIIVLNKCDLXXXXXXXXXXXXVRKGLKSMGV------DENS-PIVEMSLADGYFKEEML 180 V++ L K DL ++S D +S P+V +++ + + Sbjct: 811903 VVVALTKTDLVPSAERDNVIGKCSHEVRSFMATNFNFHDTSSIPVVPVAVGSNQDPQGIP 811724 Query: 181 QNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALN 240 Q L+ A+ + + P+RD G F +A+DHCF++ G GT+LTGTV+ G L E+E L Sbjct: 811723 QLLE-ALNANLQVPERDHSGSFCLAVDHCFSVPGNGTILTGTVLSGALERGDELELLPLG 811547 Query: 241 EKRRVKTLETWKXXXXXXXXXXXXXFLVAPSFDEHRFSRCIC-GPLGTLKSTKFVLATVE 299 K +VKTL+ +K V D R + P G+L V+ V Sbjct: 811546 AKVKVKTLQVFKKDVAKCSQGDRVGLRV-NGLDPALVERALAVSPPGSLTPVTQVVIPVT 811370 Query: 300 PIQFFRK-SINSKSKIHVAVAFETVMAECQF---LKEKENGEFEMLPSLL---------- 345 + FF + S S K HV V T++A F L + E PS L Sbjct: 811369 KVPFFHEISCKSGGKCHVTVGHTTIIAMATFFTCLGGDKGDETGFNPSALYEYVEELSDE 811190 Query: 346 -----APCQVLFSFEKSIFLPENYSNPFMAARLE-QQPGSGCRFAFSGIFSQILPENGKN 399 L FE+++F P + +R++ CR AF G+ ++ + + Sbjct: 811189 KEAEEGMIFALLQFEQAVFCPP--KTLVVCSRMDLDAKRFPCRLAFYGVIQGVVGSSDEE 811016 Query: 400 L 400 L Sbjct: 811015 L 811013 Score = 28.1 bits (61), Expect(2) = 8e-42 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Frame = -1 Query: 407 KCRKGHVERV----EKDGFSAICTGMFKAETNFDVFRGFQIC-TSSGPRGKIEGAFGKSG 461 K R G V+++ ++D I MF + + V + + S G I G FGK+G Sbjct: 810950 KSRDGFVDKLVMNSKEDVKEVIGREMFSKDVKWSVCQDSVVLFEESQVLGTILGPFGKAG 810771 Query: 462 KFRVTFA 468 KFR+ A Sbjct: 810770 KFRLALA 810750 >PHYCAscaffold_87 Length = 182599 Score = 99.4 bits (246), Expect = 1e-20 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 16/242 (6%) Frame = -3 Query: 14 LNLGILGHVDSGKTTLTRRIAELGS-------TSAFDAH-ATSTTTDGIRRNTLDLGFST 65 LN+G +GHVD GKTTLT I ++ S TS D A GI +T + + T Sbjct: 97787 LNVGTIGHVDHGKTTLTAAITKVLSETGGAEFTSYADIDKAPEERARGITISTAHVEYET 97608 Query: 66 MTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCP 125 S R A +DCPGH+ ++ ++ + D I+++ G PQT EH+LLA + Sbjct: 97607 ----SKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQVGV 97440 Query: 126 NRVIIVLNKCD-LXXXXXXXXXXXXVRKGLKS-------MGVDENSPIVEMSLADGYFKE 177 +++ +NK D + +R+ L++ + V + S + + D Sbjct: 97439 PALVVFMNKVDQVDDEELLELVEMEIRELLEAYDFPADDIPVVQGSALAAVEDRDHNIGR 97260 Query: 178 EMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFP 237 + + L +++ I +P RD E FL+ ++ F+I G+GTV++G V +GV+ E+E Sbjct: 97259 DAVLKLMDEVDAYIPDPVRDFEKPFLMPVEDVFSISGRGTVVSGRVEQGVINTGDEVELV 97080 Query: 238 AL 239 L Sbjct: 97079 GL 97074 >PHYCAscaffold_41 Length = 565801 Score = 66.2 bits (160), Expect = 1e-10 Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 37/259 (14%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLTRRIA-----------------ELGSTSAFDAHATSTTTDGIRR 56 +N+G +GHV GK+T+ + I+ +LG +A A + T G R Sbjct: 339679 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYRAENGTGIGCYR 339500 Query: 57 --------NTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108 +D T + R ++ +DCPGH L+ +L + V D A+++ VAG Sbjct: 339499 AFGSSKPDRFVDENDEKTTWVLQRHVSFVDCPGHDILMATMLNGAAVMDAALLL---VAG 339329 Query: 109 ----IQPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLKSMGVDENSP 164 QPQT+EHL +II+ NK DL ++K + V ++P Sbjct: 339328 NEVCPQPQTSEHLAAIEIMRLQNIIILQNKVDLIKEDAAVAQHEQIKKFVAGT-VAHDAP 339152 Query: 165 IVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKG--------QG 216 I+ +S Y + + + I I PKRD + + + F + +G Sbjct: 339151 IIPISAVLKYNVDVVCE----YICRNIPIPKRDFTSKPKLIVIRSFDVNKPGEDVENLKG 338984 Query: 217 TVLTGTVIRGVLRLNTEIE 235 V G+++ GVLR+ EIE Sbjct: 338983 GVAGGSILEGVLRVGDEIE 338927 >PHYCAscaffold_79 Length = 222129 Score = 61.6 bits (148), Expect = 3e-09 Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Frame = -3 Query: 18 ILGHVDSGKTTLTRRIAELGSTSAFDAHATSTT---------TDGIRRNTLDLGFSTMTS 68 I+GHVD+GKT L I + T DA A T D I++ T L + Sbjct: 60238 IMGHVDTGKTKLLDNIRK---TKVQDAEAGGITQQIGATFFPVDAIKQKTARLAETMKLE 60068 Query: 69 LSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCPNR 127 L +ID PGH S++ D+AI+++D++ G++PQT E L LL K P Sbjct: 60067 YRLPGLLVIDTPGHESFTNLRNRGSSLCDIAILVVDIMHGLEPQTLESLRLLRQKKAP-- 59894 Query: 128 VIIVLNKCD 136 ++ LNK D Sbjct: 59893 FVVALNKID 59867 >PHYCAscaffold_70 Length = 280435 Score = 57.4 bits (137), Expect = 5e-08 Identities = 69/275 (25%), Positives = 109/275 (39%), Gaps = 39/275 (14%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54 ++L ++GHVD+GK+T T + AELG TS A Sbjct: 109294 ISLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKTSFKYAWVLDNLKAER 109473 Query: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 R T+D+ S +ID PGH I+ ++ ++ D AI+++ + AG Sbjct: 109474 ERGITIDIALWKFESPK-YFFTVIDAPGHRDFIKNMITGTSQADCAILVVASGVGEFEAG 109650 Query: 109 I--QPQTAEHLLLASKFCPNRVIIVLNKCD----LXXXXXXXXXXXXVRKGLKSMGVDEN 162 I + QT EH LLA ++I+ +NK D + V LK +G Sbjct: 109651 ISKEGQTREHALLAFTLGVKQMIVAINKMDDSSVMYGQARYEEIKNEVTTYLKKVGYKPA 109830 Query: 163 S-PIVEMSLADGYFKEEMLQNLK-------LAIESRIFEPKRDEEGEFLIAIDHCFAIKG 214 P V +S +G + N+ L + PKR + + + + I G Sbjct: 109831 KIPFVPISGWEGDNMIDRSTNMPWYKGPYLLEALDNLNAPKRPVDKPLRLPLQDVYKIGG 110010 Query: 215 QGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 GTV G V GV++ F + VK++E Sbjct: 110011 IGTVPVGRVETGVIKPGMVATFGPVGLSTEVKSVE 110115 >PHYCAscaffold_60 Length = 366873 Score = 55.8 bits (133), Expect = 1e-07 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 6/128 (4%) Frame = +3 Query: 15 NLGILGHVDSGKTTLTRRIAELGST-----SAFDAHATSTTTDGIRRNTLDLGFSTMT-S 68 N+GIL H+D+GKTT T R+ D AT R + +G + ++ Sbjct: 121944 NIGILAHIDAGKTTTTERMLFYSGAIRRMGEVHDGDATMDFMPQERERGITIGAAAISFP 122123 Query: 69 LSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRV 128 + LID PGH V A V D A+ ++D VAG++ QT A ++ R+ Sbjct: 122124 WREHHINLIDTPGHVDFTIEVERAVRVLDGAVAVLDGVAGVEAQTETVWEQADRYNVPRI 122303 Query: 129 IIVLNKCD 136 + V NK D Sbjct: 122304 VFV-NKLD 122324 >PHYCAscaffold_54 Length = 427428 Score = 52.8 bits (125), Expect = 1e-06 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 29/153 (18%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLTRRIA-------------------ELGSTSAFDAHATSTTTDGI 54 +++ ++GHVD+GK+T+T + E G +S A+A D Sbjct: 133281 ISMVVIGHVDAGKSTITGHLLYKLGYVSKRLMHKYEKESREAGKSSF--AYAWVMDADEE 133108 Query: 55 RRN---TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--- 108 R+ T+D+G S + + + L+D PGH I ++A + D+A++++ V G Sbjct: 133107 ERSRGVTMDVGTSHFET-DTKHVTLLDAPGHRDFIPKMIAGAAQADVAVLVVPAVTGEFE 132931 Query: 109 ----IQPQTAEHLLLASKFCPNRVIIVLNKCDL 137 QT EH LL +++++ +NK D+ Sbjct: 132930 AAFENSGQTKEHTLLVRSLGVSQMVVAVNKMDM 132832 >PHYCAscaffold_102 Length = 120866 Score = 50.8 bits (120), Expect = 5e-06 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 30/153 (19%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54 LN+ ++GHVD+GK+TL+ R + S F A+ T + Sbjct: 19988 LNVVLIGHVDAGKSTLSGNLLYLMDQVDKRTIERYEREAKQRNRDSWFLAYIMDTGDEER 19809 Query: 55 RRN-TLDLG---FSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG-- 108 + T+++G F T T RR ++D PGH + ++ ++ D+ +++I G Sbjct: 19808 AKGITVEVGRAHFETET----RRFTILDAPGHKNYVPNMIQGASQADIGLLVISARKGEF 19641 Query: 109 -----IQPQTAEHLLLASKFCPNRVIIVLNKCD 136 QT EH +LA N++I+V+NK D Sbjct: 19640 ETGFERGGQTREHAMLAKTLGINKLIVVINKMD 19542 >PHYCAscaffold_27 Length = 705730 Score = 49.3 bits (116), Expect = 1e-05 Identities = 31/122 (25%), Positives = 56/122 (45%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRL 74 N+ I+ HVD GKTTL ++ + G T + + R + T +G L Sbjct: 491317 NVAIVAHVDHGKTTLVDQLLKHGGTQLSEERVMDSIDLERERGITIMSKCTRVEYNGHVL 491138 Query: 75 ALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNK 134 ++D PGH+ V ++ D ++++D G QT + +L + + ++V+NK Sbjct: 491137 NIVDTPGHADFGGEVERILSMVDGVVLVVDATEGPMSQT-KFVLTKALHRGLKPLVVVNK 490961 Query: 135 CD 136 D Sbjct: 490960 VD 490955 >PHYCAscaffold_7 Length = 1368812 Score = 49.3 bits (116), Expect = 1e-05 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 27/150 (18%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHA-TSTTTDG 53 ++L ++GHVD+GK+T T + AELG TS A + + Sbjct: 1124968 ISLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKTSFKYAWVLDNLKAER 1125147 Query: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 R T+D+ S +ID PGH I+ ++ ++ D AI+++ + AG Sbjct: 1125148 ERGITIDIALWKFES-PKYFFTVIDAPGHRDFIKNMITGTSQADCAILVVASGVGEFEAG 1125324 Query: 109 I--QPQTAEHLLLASKFCPNRVIIVLNKCD 136 I + QT EH LLA ++I+ +NK D Sbjct: 1125325 ISKEGQTREHALLAFTLGVKQMIVAINKMD 1125414 >PHYCAscaffold_21 Length = 930814 Score = 47.8 bits (112), Expect = 4e-05 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 2/129 (1%) Frame = -3 Query: 11 VGPLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLS 70 V P + ++GHVD GKTTL + + S A T I ++D+G S Sbjct: 121694 VRPPVVSVMGHVDHGKTTLLDALRK----SKVAASEAGGITQRIGAFSVDMGKKFG---S 121536 Query: 71 GRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRV-- 128 ++ ID PGH+ S + D+ ++++ G++PQT E LA K N V Sbjct: 121535 HAKVTFIDTPGHAAFSNMRSRGSELTDLLVLVVAADDGVRPQTVEVARLALK---NNVPL 121365 Query: 129 IIVLNKCDL 137 I+ + K D+ Sbjct: 121364 IVAVTKMDM 121338 Score = 33.9 bits (76), Expect = 0.58 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 28/135 (20%) Frame = +2 Query: 14 LNLGILGHVDSGKTTLTRRIA----------------------ELGSTSAFDAHATSTTT 51 L L +G+VDSGK++L + E G TS+ Sbjct: 172190 LRLAFVGNVDSGKSSLIGTLIKGDLDDGRGSSRQAIFRHKHEIESGRTSSVATAYLGFDE 172369 Query: 52 DG----IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVF--DMAIVIIDV 105 G +R + ++ + ++ +R+ LID GH ++ + T D+ +V++ Sbjct: 172370 TGEQILSKRAGKLIPWAELAKMAHKRIQLIDLAGHEKYLKTTVFGLTGMQPDVVVVVVGA 172549 Query: 106 VAGIQPQTAEHLLLA 120 G++ T EHL +A Sbjct: 172550 NMGVKRMTKEHLAIA 172594 >PHYCAscaffold_11 Length = 1076090 Score = 47.8 bits (112), Expect = 4e-05 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Frame = +2 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGI--RRNTLDL---------GF 63 N+GI H+DSGKTTLT RI L T +A DG+ + ++++L Sbjct: 83159 NIGISAHIDSGKTTLTERI--LFYTGRINAIHDVRGKDGVGAKMDSMELEREKGITIQSA 83332 Query: 64 STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 +T S + +ID PGH V A V D ++++ V+G+Q Q+ Sbjct: 83333 ATYCSWKESNINIIDTPGHVDFTIEVERALRVLDGGVLVLCGVSGVQSQS 83482 >PHYCAscaffold_3 Length = 1611504 Score = 45.4 bits (106), Expect = 2e-04 Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 13/226 (5%) Frame = +1 Query: 16 LGILGHVDSGKTTLTRRI-----AELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLS 70 + ++GHVD GKTTL + A L + ++ H T + Sbjct: 484075 IAVMGHVDHGKTTLMDTLRKQMKAGLKQIAPYEKHGI----------TQKINVCEAALTP 484224 Query: 71 GRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVII 130 + +D PGH R +A+ V D ++I+ G+ QT E + A + +I Sbjct: 484225 DVKTTFLDTPGHFHFFRMRTSAAQVADAVLLIVAADEGVLLQT-EESIGAIEEAGLPAVI 484401 Query: 131 VLNKCDLXXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESR 190 +NK DL V + L+S ++SP++ +S G +++ Q + + Sbjct: 484402 CINKVDLLGEDDDGQVDKIVDE-LRSFVALQDSPVLTISGKTGAGLDDLKQTVWELVMGL 484578 Query: 191 IFEPKRD--------EEGEFLIAIDHCFAIKGQGTVLTGTVIRGVL 228 E + D EG L ++ A+KG+GTVL + G L Sbjct: 484579 DDERRLDAVVGSETHAEGLVLESV----ALKGRGTVLRVLIKNGEL 484704 >PHYCAscaffold_105 Length = 102149 Score = 41.6 bits (96), Expect = 0.003 Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 37/159 (23%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIAE----LGSTSAFDAHATSTTTDGIRR-------------- 56 N+ ++ HVD GK+TLT + + + A +A T T D R Sbjct: 16003 NMSVIAHVDHGKSTLTDSLVSKAGIISAKHAGEARFTDTRADEQERCITIKSTGISMFFE 15824 Query: 57 NTLDLGFSTMTSLSGRRLA-------------------LIDCPGHSGLIRAVLAASTVFD 97 +D G + + A LID PGH V AA V D Sbjct: 15823 YDMDAGEAATAAAIAHETAEEAAAGQEVVINKNSYLINLIDSPGHVDFSSEVTAALRVTD 15644 Query: 98 MAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCD 136 A+V++D + G+ QT E +L S + ++++NK D Sbjct: 15643 GALVVVDCIEGVCVQT-ETVLRQSIGERVKPVLMVNKVD 15530 >PHYCAscaffold_29 Length = 707326 Score = 40.4 bits (93), Expect = 0.006 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -1 Query: 422 SAICTGMFKAETNFDVFRGFQICTSSGPRGKIEGAF-GKSGKFRVTFAEKI 471 +A GMF E F G I T SG RG+I+ A G+ G FR TF +KI Sbjct: 337879 TAFIKGMFNTELEVAKFEGASIRTVSGVRGRIKKALRGEKGDFRATFEDKI 337727 >PHYCAscaffold_55 Length = 463907 Score = 36.2 bits (82), Expect = 0.12 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 10/111 (9%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFS--------TM 66 ++ ++G + GKT T + + + +D TD R++ + S + Sbjct: 354381 HVAVIGDLHHGKTLFTDLLVQQTHVNKWDPAVEKRFTDS-RKDEQERKVSIKSAPVSLVL 354205 Query: 67 TSLSGRR--LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAE 115 + G+ L ++DCPGH AA V D A++++D + G+ E Sbjct: 354204 PTSRGKHYLLNVLDCPGHVNFSDETTAALQVADGAVLVVDAIEGVMMNVRE 354052 >PHYCAscaffold_12 Length = 1145657 Score = 33.1 bits (74), Expect = 0.99 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +3 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPN-RVIIVLNK 134 L+D PGH V A + D A+V+ID V G+ QT H ++ + R +V+NK Sbjct: 454767 LVDSPGHVDFSFDVSTAVRLCDGALVLIDAVEGVCAQT--HAVIRQAWKEGIRPCLVINK 454940 Query: 135 CD 136 D Sbjct: 454941 MD 454946 >PHYCAscaffold_48 Length = 534789 Score = 32.7 bits (73), Expect = 1.3 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -2 Query: 11 VGPLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGI 54 + P+N+ + G SGKT + RR+A++ + AT T GI Sbjct: 426647 ISPMNILMSGPTGSGKTEIARRLAKISGSPFLKVEATKFTEVGI 426516 >PHYCAscaffold_46 Length = 525601 Score = 32.0 bits (71), Expect = 2.2 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = +2 Query: 39 TSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDM 98 T ++ T +T +T LGF + ++SG+ A S R V+A +T Sbjct: 63680 TLPLESRGTCSTKSDCIEHTAVLGFDLLKAISGQATA-------SDSTR-VVAGATRRVA 63835 Query: 99 AIVIIDVVAGIQPQTAEHLLLASK 122 +++ I +V G+ P+T HL+LASK Sbjct: 63836 SLLSIVLVLGV-PETRSHLILASK 63904 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,462,250 Number of Sequences: 917 Number of extensions: 448438 Number of successful extensions: 2073 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 29 Number of HSP's that attempted gapping in prelim test: 1694 Number of HSP's gapped (non-prelim): 964 length of query: 500 length of database: 21,341,249 effective HSP length: 109 effective length of query: 391 effective length of database: 21,241,296 effective search space: 8305346736 effective search space used: 8305346736 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 65 (29.6 bits)