TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Caenorhabditis elegans # Complete
         (500 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338244959|gb|AFNH01000685.1| Gregarina niphandrodes asmbl.159...    61   8e-10
gi|338243594|gb|AFNH01001368.1| Gregarina niphandrodes asmbl.219...    56   3e-08
gi|338242838|gb|AFNH01001746.1| Gregarina niphandrodes asmbl.254...    55   4e-08
gi|338242864|gb|AFNH01001733.1| Gregarina niphandrodes asmbl.253...    55   4e-08
gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.266...    52   4e-07
gi|338241698|gb|AFNH01002316.1| Gregarina niphandrodes asmbl.306...    50   1e-06
gi|338242636|gb|AFNH01001847.1| Gregarina niphandrodes asmbl.263...    35   0.060
gi|338245525|gb|AFNH01000403.1| Gregarina niphandrodes asmbl.136...    28   9.6  

>gi|338244959|gb|AFNH01000685.1| Gregarina niphandrodes asmbl.15994,
            whole genome shotgun sequence
          Length = 8241

 Score = 61.2 bits (147), Expect = 8e-10
 Identities = 66/272 (24%), Positives = 110/272 (40%), Gaps = 50/272 (18%)
 Frame = -1

Query: 14   LNLGILGHVDSGKTTLTRRIA-----------------ELG-------------STSAFD 43
            +N+G +GHV  GK+T+ R ++                 +LG             S  A+ 
Sbjct: 3018 INVGTIGHVAHGKSTVVRALSGVQTVRFKNEKERNITIKLGYANAKLFKCDICPSPGAYS 2839

Query: 44   AHATS--------TTTDGIRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTV 95
            +H +         T   G+RR               R ++ +DCPGH  L+  +L  + V
Sbjct: 2838 SHGSGHADEYPCPTCGKGVRRVV-------------RHVSFVDCPGHDILMATMLNGAAV 2698

Query: 96   FDMAIVIIDVVAG----IQPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVR 151
             D A+++   VAG     QPQT+EHL          +I++ NK +L            ++
Sbjct: 2697 MDAALLL---VAGNEPCPQPQTSEHLAAVEIMKLRHLIVLQNKVELIKEEQCLVQQEQIK 2527

Query: 152  KGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFA 211
              +K    D N+PIV +S    Y  + + + +     SRI  P RD   +  + +   F 
Sbjct: 2526 DFVKGTAAD-NAPIVPISAILKYNMDVVAEYMC----SRIAVPVRDFSAKPEMIVIRSFD 2362

Query: 212  IKGQGT--------VLTGTVIRGVLRLNTEIE 235
            +   G         V  G++++GV +L   IE
Sbjct: 2361 VNKPGDSIEAMVGGVAGGSILKGVFKLGDAIE 2266


>gi|338243594|gb|AFNH01001368.1| Gregarina niphandrodes asmbl.2197,
            whole genome shotgun sequence
          Length = 2909

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
 Frame = -3

Query: 16   LGILGHVDSGKTTLTRRI--AELGSTSAFDAHATSTTTDGIRRNTLDL--GFSTMTSLSG 71
            L I+GHVD+GKT L  +I    +G   A         T   R + L          +L  
Sbjct: 1896 LCIMGHVDTGKTKLLDKIRRTNVGEKEAGGITQQIGATFFPRESLLTQCHKIDRKLNLQV 1717

Query: 72   RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCPNRVII 130
              L +ID PGH+         S++ D+AI+++D++ G++PQT E + +L  + CP   ++
Sbjct: 1716 PGLLIIDTPGHASFSNLRKRGSSLCDLAILVVDIMHGLEPQTRESIQMLKQRRCP--FVV 1543

Query: 131  VLNKCD 136
             LNK D
Sbjct: 1542 ALNKVD 1525


>gi|338242838|gb|AFNH01001746.1| Gregarina niphandrodes asmbl.2543,
            whole genome shotgun sequence
          Length = 7176

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 40/276 (14%)
 Frame = -3

Query: 14   LNLGILGHVDSGKTTLTRR-IAELG-----STSAFDAHATSTTTDGI------------- 54
            +NL ++GHVDSGK+T T   I +LG     +   F+  +T                    
Sbjct: 3217 INLVVIGHVDSGKSTTTGHLIYKLGGIDQRTIEKFEKESTEMGKGSFKYAWILDKLKAER 3038

Query: 55   -RRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG----- 108
             R  T+D+      +       +ID PGH   I+ ++  ++  D+A++++    G     
Sbjct: 3037 ERGITIDIALWKFET-PRFEYTVIDAPGHRDFIKNMITGTSQADVALLVVPADIGGFEGA 2861

Query: 109  --IQPQTAEHLLLASKFCPNRVIIVLNKCDL--XXXXXXXXXXXXVRKGLKSMGVDENSP 164
               + QT EH LLA     +++I+ +NK D               V   LK +G   +  
Sbjct: 2860 FSKEGQTREHALLAYTLGVSQMIVGINKMDACGYKQDRFDEIQKEVSGYLKRVGYKVDK- 2684

Query: 165  IVEMSLADGYFKEEMLQ-----------NLKLAIESRIFEPKRDEEGEFLIAIDHCFAIK 213
             +      G+  + M++            L  A++ ++  PKR +E    + +   + I 
Sbjct: 2683 -IHFVAISGFMGDNMIEKSPNMPWYKGLTLVEALD-KMEVPKRPDEKPLRLPLQDVYKIG 2510

Query: 214  GQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249
            G GTV  G V  G L+ N  + F        VK++E
Sbjct: 2509 GIGTVPVGRVETGTLKPNMSVCFAPSGVTTDVKSVE 2402


>gi|338242864|gb|AFNH01001733.1| Gregarina niphandrodes asmbl.2531,
            whole genome shotgun sequence
          Length = 9575

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 40/276 (14%)
 Frame = -2

Query: 14   LNLGILGHVDSGKTTLTRR-IAELG-----STSAFDAHATSTTTDGI------------- 54
            +NL ++GHVDSGK+T T   I +LG     +   F+  +T                    
Sbjct: 1783 INLVVIGHVDSGKSTTTGHLIYKLGGIDQRTIEKFEKESTEMGKGSFKYAWILDKLKAER 1604

Query: 55   -RRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG----- 108
             R  T+D+      +       +ID PGH   I+ ++  ++  D+A++++    G     
Sbjct: 1603 ERGITIDIALWKFET-PRFEYTVIDAPGHRDFIKNMITGTSQADVALLVVPADIGGFEGA 1427

Query: 109  --IQPQTAEHLLLASKFCPNRVIIVLNKCDL--XXXXXXXXXXXXVRKGLKSMGVDENSP 164
               + QT EH LLA     +++I+ +NK D               V   LK +G   +  
Sbjct: 1426 FSKEGQTREHALLAYTLGVSQMIVGINKMDACGYKQDRFDEIQKEVSGYLKRVGYKVDK- 1250

Query: 165  IVEMSLADGYFKEEMLQ-----------NLKLAIESRIFEPKRDEEGEFLIAIDHCFAIK 213
             +      G+  + M++            L  A++ ++  PKR +E    + +   + I 
Sbjct: 1249 -IHFVAISGFMGDNMIEKSPNMPWYKGLTLVEALD-KMEVPKRPDEKPLRLPLQDVYKIG 1076

Query: 214  GQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249
            G GTV  G V  G L+ N  + F        VK++E
Sbjct: 1075 GIGTVPVGRVETGTLKPNMSVCFAPSGVTTDVKSVE 968


>gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.2669,
            whole genome shotgun sequence
          Length = 19534

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
 Frame = +3

Query: 15   NLGILGHVDSGKTTLTRRIAE----LGSTSAFDAHATSTTTDG------IRRNTLDLGFS 64
            N+ ++ HVD GK+TLT  +      + + +A DA  T T  D       I+   + L F 
Sbjct: 7812 NMSVIAHVDHGKSTLTDSLVSKAGIISAKAAGDARFTDTRQDEQDRCITIKSTGISLYFE 7991

Query: 65   TMTSLSGRR----LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTAEHLL 118
              T+         + LID PGH      V AA  V D A+V++D V G  +Q +T     
Sbjct: 7992 HQTATDKPAEPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDAVEGVCVQTETVLRQA 8171

Query: 119  LASKFCPNRVIIVLNKCD 136
            L+ +  P   ++ +NK D
Sbjct: 8172 LSERVKP---VLHMNKVD 8216


>gi|338241698|gb|AFNH01002316.1| Gregarina niphandrodes asmbl.3063,
            whole genome shotgun sequence
          Length = 20465

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
 Frame = +3

Query: 14   LNLGILGHVDSGKTTLTRRIAEL-GSTSA-----FDAHATSTTTDG--------IRRNTL 59
            +N+  +GHVD+GK+T    I  L G   A     ++  A     +         +     
Sbjct: 5511 VNIVFIGHVDAGKSTTCGNILCLTGQVDARTMEKYEKEAIDNNRESWYFAYVMDVNEEER 5690

Query: 60   DLGFSTMTSLSG-----RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG------ 108
            + G +T    +G     RR  ++D PGH   +  +LA ++  D+ ++II    G      
Sbjct: 5691 EKGITTEVGRAGFEFKTRRFTILDAPGHKSFVPEMLAGASQADIGVLIISARKGEFESGF 5870

Query: 109  -IQPQTAEHLLLASKFCPNRVIIVLNKCD 136
                QT EH LLA     N +I+ +NK D
Sbjct: 5871 ERGGQTQEHALLAKTLGVNYLIVAVNKMD 5957


>gi|338242636|gb|AFNH01001847.1| Gregarina niphandrodes asmbl.2635,
            whole genome shotgun sequence
          Length = 10546

 Score = 35.0 bits (79), Expect = 0.060
 Identities = 34/124 (27%), Positives = 54/124 (43%)
 Frame = +3

Query: 13   PLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGR 72
            P  + + G    GKTTL + + +         H T  T   +       G  T+ S   R
Sbjct: 7287 PYVVVVHGPPGCGKTTLIKSLVK---------HYTRRTISVVG------GPITLVSSKSR 7421

Query: 73   RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVL 132
            RL L++C      + +++  + V D+AIV+ID   GI+  + E + L       +VI VL
Sbjct: 7422 RLTLVEC---DSSMASMIDMAKVADLAIVMIDSRKGIELDSFEFVNLMQNHGMPKVIGVL 7592

Query: 133  NKCD 136
               D
Sbjct: 7593 THLD 7604


>gi|338245525|gb|AFNH01000403.1| Gregarina niphandrodes asmbl.1360,
           whole genome shotgun sequence
          Length = 1140

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +1

Query: 379 SGCRFAFSGIFSQILPENGKNLPPRFTRKCRKGHVERVEKDGFSAICTGMFKAETNFDVF 438
           SGCR           P   +  PPR  R+ R+   ER +  G ++      + +TN    
Sbjct: 754 SGCR-----------PRGARQSPPRRRRRPRQARTERRQARGCASTAGPWSETDTNVGSS 900

Query: 439 RGFQICTSS 447
           RG    T++
Sbjct: 901 RGSTAATAA 927


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.322    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,086,518
Number of Sequences: 3680
Number of extensions: 114422
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 375
length of query: 500
length of database: 5,120,956
effective HSP length: 99
effective length of query: 401
effective length of database: 4,756,636
effective search space: 1907411036
effective search space used: 1907411036
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)