TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_30 85 3e-16 scaffold_70 77 6e-14 scaffold_7 77 6e-14 scaffold_52 60 7e-09 scaffold_23 57 8e-08 scaffold_1 55 4e-07 scaffold_130 54 9e-07 scaffold_2 54 9e-07 scaffold_31 52 2e-06 scaffold_8 52 3e-06 scaffold_76 46 2e-04 scaffold_15 45 4e-04 scaffold_6 45 4e-04 scaffold_3 45 4e-04 scaffold_11 44 0.001 scaffold_9 44 0.001 scaffold_5 38 0.039 scaffold_71 37 0.086 scaffold_28 34 0.73 scaffold_17 32 3.6 >scaffold_30 Length = 728828 Score = 85.1 bits (209), Expect = 3e-16 Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 3/141 (2%) Frame = +3 Query: 197 DEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPAL-NEKRRVKTLETWKXXX 255 + F AIDHCF IKG GTVLTGT + G + +N IEFP+L N +R+VK+++ +K Sbjct: 296754 NSNSNFYFAIDHCFPIKGMGTVLTGTCLNGSINVNDIIEFPSLGNLQRKVKSIQMFKRRC 296933 Query: 256 XXXXXXXXXXFLVAPSFDEHRFSRCICGPLGTLKSTKFVLATVEPI--QFFRKSINSKSK 313 V+ +FD R +C G++K K +A V I + + +KSK Sbjct: 296934 LKIQQGDRAGICVS-NFDSTSLERGVCSTPGSVKYVKGGIALVRKIIPHYKGPYLKNKSK 297110 Query: 314 IHVAVAFETVMAECQFLKEKE 334 HV+V TVMA F KE Sbjct: 297111 YHVSVGHSTVMATVSFWGAKE 297173 Score = 58.5 bits (140), Expect = 3e-08 Identities = 29/91 (31%), Positives = 50/91 (54%) Frame = +3 Query: 47 TSTTTDGIRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV 106 +S + N + S L ++ L+DCPGH+ LIR ++ + + D+ ++++D Sbjct: 296028 SSKDNNNTNNNNNVVSKSKSNKLKYLQMTLVDCPGHASLIRTIIGGAQIIDIVLLVVDAY 296207 Query: 107 AGIQPQTAEHLLLASKFCPNRVIIVLNKCDL 137 G Q QT E L+LA + + +II LNK D+ Sbjct: 296208 KGWQAQTTECLVLA-ELTSSTLIIALNKIDM 296297 Score = 42.4 bits (98), Expect = 0.002 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 19/113 (16%) Frame = +3 Query: 374 EQQPG------SGCRFAFSGIFSQILPENGKNLPPR--FTRKCRKGHVERV------EKD 419 E PG S CR AF G + L + K++ +T K ++G V R+ + D Sbjct: 297663 EDSPGHKNNKASSCRLAFCGRLIERLTDPSKDIHKIRWYTPKEKRGIVSRLGDPHKRQDD 297842 Query: 420 G----FSAICTGMFKAETNFDVFRGFQICT-SSGPRGKIEGAFGKSGKFRVTF 467 + + +FK ET F G ++ T S G+++ AFG SGKFRV F Sbjct: 297843 SKTVRYELYGSDLFKKETLLKPFLGMKLITYPSNDIGELKSAFGTSGKFRVVF 298001 Score = 40.0 bits (92), Expect = 0.010 Identities = 17/30 (56%), Positives = 25/30 (83%) Frame = +2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFD 43 +N+GILGHVDSGKT+L + ++ L ST++ D Sbjct: 295475 INVGILGHVDSGKTSLVKTLSTLLSTASLD 295564 >scaffold_70 Length = 275172 Score = 77.4 bits (189), Expect = 6e-14 Identities = 46/179 (25%), Positives = 92/179 (51%), Gaps = 8/179 (4%) Frame = +1 Query: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLN 133 L+ + PGH+ ++ ++ + D I+++ G PQT EH+LLA + +++ +N Sbjct: 141130 LSYLYSPGHADYVKNMITGAAQMDGGILVVAATDGPMPQTREHILLAKQVGIPNLVVFMN 141309 Query: 134 KCDL-XXXXXXXXXXXXVRKGLKSMGVDENSPIV----EMSLADGYFKE---EMLQNLKL 185 KCDL +R+ L D + + + A+G E + + L Sbjct: 141310 KCDLVDDEELLELVEMEIRELLCQYDYDGDEITIIRGSALCAAEGTNHEMGRDAILQLMD 141489 Query: 186 AIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRR 244 A++ I EP+RD + +FL++++ F+I G+GTV+TG V +G++ + ++E + ++ Sbjct: 141490 AVDEHIPEPERDLDKDFLMSVEDTFSIAGRGTVVTGRVEQGIVNVGDDLEVVGFEQDQK 141666 Score = 34.3 bits (77), Expect = 0.56 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTD 52 +N+G +GHVD GKTTLT+ I ++ S + T D Sbjct: 140606 VNIGTIGHVDHGKTTLTQAITKVLSEKGWSEAMTYEDID 140722 >scaffold_7 Length = 2770240 Score = 77.4 bits (189), Expect = 6e-14 Identities = 46/179 (25%), Positives = 92/179 (51%), Gaps = 8/179 (4%) Frame = -1 Query: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLN 133 L+ + PGH+ ++ ++ + D I+++ G PQT EH+LLA + +++ +N Sbjct: 2201200 LSYLYSPGHADYVKNMITGAAQMDGGILVVAATDGPMPQTREHILLAKQVGIPNLVVFMN 2201021 Query: 134 KCDL-XXXXXXXXXXXXVRKGLKSMGVDENSPIV----EMSLADGYFKE---EMLQNLKL 185 KCDL +R+ L D + + + A+G E + + L Sbjct: 2201020 KCDLVDDEELLELVEMEIRELLCQYDYDGDEITIIRGSALCAAEGTNHEMGRDAILQLMD 2200841 Query: 186 AIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRR 244 A++ I EP+RD + +FL++++ F+I G+GTV+TG V +G++ + ++E + ++ Sbjct: 2200840 AVDEHIPEPERDLDKDFLMSVEDTFSIAGRGTVVTGRVEQGIVNVGDDLEVVGFEQDQK 2200664 Score = 60.5 bits (145), Expect = 7e-09 Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 46/268 (17%) Frame = +2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRN-TLDLGFSTMTSLSG- 71 +N+G +GHV GK+T+ + I+ + T + + RN T+ LG++ G Sbjct: 2007167 INIGTIGHVAHGKSTVVKAISGV---------QTVRFKNELERNITIKLGYANAKIYKGD 2007319 Query: 72 --------------------------------RRLALIDCPGHSGLIRAVLAASTVFDMA 99 R ++ +DCPGH L+ +L + V D A Sbjct: 2007320 PKGEKGGSYTSRGSNHADEFIDDVTGITYRLRRHVSFVDCPGHDILMATMLNGAAVMDAA 2007499 Query: 100 IVIIDVVAG----IQPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLK 155 ++ VAG QPQT+EHL ++I+ NK DL +RK + Sbjct: 2007500 FLL---VAGNETCPQPQTSEHLAAVEIMRLKEILILQNKVDLVKPDAALAQQEQIRKFVA 2007670 Query: 156 SMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKG- 214 V +++PI+ +S Y + + + I +I P RD + + F + Sbjct: 2007671 GT-VADSAPIIPISAVLKYNIDVVCE----YIVRKIPLPIRDFTSVPQLIVIRSFDVNRP 2007835 Query: 215 -------QGTVLTGTVIRGVLRLNTEIE 235 QG V G++++GVL++ E+E Sbjct: 2007836 GQDVSDLQGGVAGGSILKGVLKVGDEVE 2007919 Score = 34.3 bits (77), Expect = 0.56 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTD 52 +N+G +GHVD GKTTLT+ I ++ S + T D Sbjct: 2201718 VNIGTIGHVDHGKTTLTQAITKVLSEKGWSEAMTYEDID 2201602 >scaffold_52 Length = 408677 Score = 60.5 bits (145), Expect = 7e-09 Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 46/268 (17%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRN-TLDLGFSTMTSLSG- 71 +N+G +GHV GK+T+ + I+ + T + + RN T+ LG++ G Sbjct: 405985 INIGTIGHVAHGKSTVVKAISGV---------QTVRFKNELERNITIKLGYANAKIYKGD 406137 Query: 72 --------------------------------RRLALIDCPGHSGLIRAVLAASTVFDMA 99 R ++ +DCPGH L+ +L + V D A Sbjct: 406138 PKGEKGGSYTSRGSNHADEFIDDVTGITYRLRRHVSFVDCPGHDILMATMLNGAAVMDAA 406317 Query: 100 IVIIDVVAG----IQPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLK 155 ++ VAG QPQT+EHL ++I+ NK DL +RK + Sbjct: 406318 FLL---VAGNETCPQPQTSEHLAAVEIMRLKEILILQNKVDLVKPDAALAQQEQIRKFVA 406488 Query: 156 SMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKG- 214 V +++PI+ +S Y + + + I +I P RD + + F + Sbjct: 406489 GT-VADSAPIIPISAVLKYNIDVVCE----YIVRKIPLPIRDFTSVPQLIVIRSFDVNRP 406653 Query: 215 -------QGTVLTGTVIRGVLRLNTEIE 235 QG V G++++GVL++ E+E Sbjct: 406654 GQDVSDLQGGVAGGSILKGVLKVGDEVE 406737 >scaffold_23 Length = 885465 Score = 57.0 bits (136), Expect = 8e-08 Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Frame = +2 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTS--AFDAHATSTTTDGIR----RNTLDLGFSTMTS 68 N+GI+ H+D+GKTT T RI S + H T D + R +T Sbjct: 750968 NIGIMAHIDAGKTTTTERILYYTGKSYKIGEVHEGGATMDWMEQEQERGITITSAATTCQ 751147 Query: 69 LSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRV 128 R+ +ID PGH V + V D A+ + D VAG++PQ+ A K+ R+ Sbjct: 751148 WKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKYKVPRM 751327 Query: 129 IIVLNKCD 136 LNK D Sbjct: 751328 CF-LNKMD 751348 Score = 45.8 bits (107), Expect = 2e-04 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 27/150 (18%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTT-TDG 53 LNL +GHVD+GK+TL+ + E S F A T + Sbjct: 350260 LNLVFIGHVDAGKSTLSGSILYILDYVDKRTIERYEKEAKERNRESWFLAFIMDTNEEER 350439 Query: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG----- 108 + T+++G + + +R ++D PGH + ++ ++ D+ +++I G Sbjct: 350440 AKGKTVEVGKAHFET-EAKRYTILDAPGHKNYVPNMIMGASQADVGVLVISARKGEFETG 350616 Query: 109 --IQPQTAEHLLLASKFCPNRVIIVLNKCD 136 QT EH +LA + +++V+NK D Sbjct: 350617 FDRGGQTREHAMLAKTLGVSYLVVVVNKMD 350706 Score = 33.9 bits (76), Expect = 0.73 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRI 33 N+GI H+DSGKTTLT RI Sbjct: 726616 NIGISAHIDSGKTTLTERI 726672 >scaffold_1 Length = 5926375 Score = 54.7 bits (130), Expect = 4e-07 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 8/127 (6%) Frame = +1 Query: 18 ILGHVDSGKTTLTRRI-------AELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLS 70 I+GHVD+GKT L +I E G + AT + T L + + Sbjct: 3034045 IMGHVDTGKTKLLDKIRKTNVQEGEAGGITQ-QIGATYFEKKTLETQTAKLNATEAFDIK 3034221 Query: 71 GRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCPNRVI 129 + +ID PGH S++ D+AI++ID++ G++PQT E L +L K P + Sbjct: 3034222 IPGMLVIDTPGHESFANLRSRGSSLCDVAILVIDMMHGLEPQTIESLNMLREKKVP--FV 3034395 Query: 130 IVLNKCD 136 + LNK D Sbjct: 3034396 VALNKID 3034416 Score = 37.0 bits (84), Expect = 0.086 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 36/161 (22%) Frame = -2 Query: 12 GPLNLGILGHVDSGKTTLTRRI---AELGSTSAFDAHATS-------------------- 48 G N+ I+ HVD GKTTL ++ A +T +H Sbjct: 4009992 GVRNVAIIAHVDHGKTTLVDQLLRSAAKTTTKTAKSHNDGSNNGEDDTTERLLDSGDLEK 4009813 Query: 49 ----TTTDGIRR---------NTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTV 95 T T + R NT D G S+ T ++ L+D PGH+ V ++ Sbjct: 4009812 ERGITITSKVTRIDEYYPTTNNTTDGGNSSSTIIN-----LVDTPGHADFCGEVDRILSL 4009648 Query: 96 FDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCD 136 D +++D G QT +++L + +++VLNK D Sbjct: 4009647 VDGVCLVVDAGEGPMAQT-KYVLSRALQARLPIVVVLNKVD 4009528 >scaffold_130 Length = 20502 Score = 53.5 bits (127), Expect = 9e-07 Identities = 45/213 (21%), Positives = 89/213 (41%) Frame = +3 Query: 18 ILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLALI 77 I+GHVD GKT+L I + T+ GI ++ + G+ + I Sbjct: 720 IMGHVDHGKTSLLDAIR--------NTRVTAGEAGGITQHIA----AYQVDHKGQSITFI 863 Query: 78 DCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCDL 137 D PGH+ + + D+ I+++ G++ QTA+ ++ A + +++ +NK DL Sbjct: 864 DTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQ-AGVPLVVAINKIDL 1040 Query: 138 XXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRD 197 + + + + + ++S +G +++L + L E + + D Sbjct: 1041EASDPNKVMTELTQYDILTEDLGGDVLTSQISAKEGTNLDDLLNKIMLQAEIQDLKANYD 1220 Query: 198 EEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRL 230 E + G GTV T V +G L++ Sbjct: 1221RNAEAFVV--EAKVEVGLGTVATSLVKKGTLKI 1313 >scaffold_2 Length = 3822992 Score = 53.5 bits (127), Expect = 9e-07 Identities = 45/213 (21%), Positives = 89/213 (41%) Frame = +1 Query: 18 ILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLALI 77 I+GHVD GKT+L I + T+ GI ++ + G+ + I Sbjct: 748792 IMGHVDHGKTSLLDAIR--------NTRVTAGEAGGITQHIA----AYQVDHKGQSITFI 748935 Query: 78 DCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCDL 137 D PGH+ + + D+ I+++ G++ QTA+ ++ A + +++ +NK DL Sbjct: 748936 DTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQ-AGVPLVVAINKIDL 749112 Query: 138 XXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRD 197 + + + + + ++S +G +++L + L E + + D Sbjct: 749113 EASDPNKVMTELTQYDILTEDLGGDVLTSQISAKEGTNLDDLLNKIMLQAEIQDLKANYD 749292 Query: 198 EEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRL 230 E + G GTV T V +G L++ Sbjct: 749293 RNAEAFVV--EAKVEVGLGTVATSLVKKGTLKI 749385 Score = 51.6 bits (122), Expect = 3e-06 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 22/121 (18%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIAELGST--SAFDAHATSTTTD--------GIRRNTLDLGF- 63 N+G+L HVD+GKTT+T R+ L SA +T TD GI + + F Sbjct: 855376 NVGVLAHVDAGKTTVTERMLALAGVVRSAGSVDDGNTVTDFLPAERERGITIQSAAISFE 855555 Query: 64 -----------STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQ 112 + + + LID PGH V + V D A++++D VAG+Q Q Sbjct: 855556 WGWHNNNNSNNNNNNHNNNVSIQLIDTPGHVDFSVEVNRSVAVLDGAVLVLDAVAGVQAQ 855735 Query: 113 T 113 T Sbjct: 855736 T 855738 >scaffold_31 Length = 773263 Score = 52.4 bits (124), Expect = 2e-06 Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 24/229 (10%) Frame = -3 Query: 45 HATSTTTDGIRRNTL-DLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII 103 H TSTTT T D+ S S + +ID PGH I ++ + D+AI+II Sbjct: 82529 HCTSTTTTTTTTTTTTDISHKNFES-SEYQFTIIDTPGHRNYIENMITGISQADVAILII 82353 Query: 104 DVV-----------AGIQPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRK 152 D GI E LLA F ++I+V+NK D +R Sbjct: 82352 DSSQYGRYDDEAGGGGICSSGNEDALLAYTFGVKQMIVVINKMDDDTVDFSEERYKSIRY 82173 Query: 153 G----LKSMGVDE-NSPIVEMS--LADGYFKEE---MLQNLKLAIES--RIFEPKRDEEG 200 LK +G P + +S L D + + N +E+ + PKR + Sbjct: 82172 DVSSLLKQVGYKPMKIPFIPISGLLGDNLISKSIHMLWYNGPSLLEALDNVNPPKRRSDK 81993 Query: 201 EFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 I I + I T+ TG V GVL+ ++EF ++T+E Sbjct: 81992 PLRIPIQDVYKINDIQTIATGRVETGVLKPGMKVEFSPSGIINTIETIE 81846 >scaffold_8 Length = 2651504 Score = 52.0 bits (123), Expect = 3e-06 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 10/109 (9%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAF------DAHATSTTTDGI---RRNTLDLGFST 65 NL I+ H DSGKTT+T ++ G A ST +D + R + + + Sbjct: 2274760 NLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRQKAEQRSTQSDFMEMERERGISISSTV 2274939 Query: 66 MT-SLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 M G RL ++D PGH A D AI+++D G++PQT Sbjct: 2274940 MNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQT 2275086 >scaffold_76 Length = 244932 Score = 45.8 bits (107), Expect = 2e-04 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 27/150 (18%) Frame = -1 Query: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTT-TDG 53 LNL +GHVD+GK+TL+ + E S F A T + Sbjct: 6324 LNLVFIGHVDAGKSTLSGSILYILDYVDKRTIERYEKEAKERNRESWFLAFIMDTNEEER 6145 Query: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG----- 108 + T+++G + + +R ++D PGH + ++ ++ D+ +++I G Sbjct: 6144 AKGKTVEVGKAHFET-EAKRYTILDAPGHKNYVPNMIMGASQADVGVLVISARKGEFETG 5968 Query: 109 --IQPQTAEHLLLASKFCPNRVIIVLNKCD 136 QT EH +LA + +++V+NK D Sbjct: 5967 FDRGGQTREHAMLAKTLGVSYLVVVVNKMD 5878 >scaffold_15 Length = 1348792 Score = 44.7 bits (104), Expect = 4e-04 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIR----------RNTLDLGFS 64 N+ ++ HVD GKTTL + DA A GIR R L + Sbjct: 1049381 NIAVIAHVDHGKTTLVDALIRQSGVFRDDAQANDA---GIRVMDSEDQERERGITILSKN 1049211 Query: 65 TMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFC 124 G ++ ++D PGH+ V + D ++++D V G +PQT +L + Sbjct: 1049210 LAVQRDGVKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQT-RFVLDKALQK 1049034 Query: 125 PNRVIIVLNKCD 136 + ++V+NK D Sbjct: 1049033 GMKALVVVNKVD 1048998 >scaffold_6 Length = 2967614 Score = 44.7 bits (104), Expect = 4e-04 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIR----------RNTLDLGFS 64 N+ ++ HVD GKTTL + DA A GIR R L + Sbjct: 117091 NIAVIAHVDHGKTTLVDALIRQSGVFRDDAQANDA---GIRVMDSEDQERERGITILSKN 117261 Query: 65 TMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFC 124 G ++ ++D PGH+ V + D ++++D V G +PQT +L + Sbjct: 117262 LAVQRDGVKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQT-RFVLDKALQK 117438 Query: 125 PNRVIIVLNKCD 136 + ++V+NK D Sbjct: 117439 GMKALVVVNKVD 117474 >scaffold_3 Length = 3437899 Score = 44.7 bits (104), Expect = 4e-04 Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIAELGST-SAFDAHATSTTTDGIRRN---TLDLGFSTM---T 67 N I+ H+D GK+TL RI E T +A D I R T+ L + + + Sbjct: 1795593 NFSIIAHIDHGKSTLADRILESTETVAARDMSEQLLDNMDIERERGITIKLQAARVLYKS 1795414 Query: 68 SLSGR--RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCP 125 + G L LID PGH V + + A++++D GI+ QT ++ LA + Sbjct: 1795413 KVDGEIYTLNLIDTPGHVDFSYEVSRSLAGCEGALLVVDASQGIEAQTLANVYLALE-NN 1795237 Query: 126 NRVIIVLNKCDL 137 +I VLNK DL Sbjct: 1795236 LEIIPVLNKIDL 1795201 >scaffold_11 Length = 1700871 Score = 43.5 bits (101), Expect = 0.001 Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 62/301 (20%) Frame = +1 Query: 14 LNLGILGHVDSGKTT-------------------LTRRIAELGSTSAFDAHATSTTTDGI 54 L++ + GHVD+GK+T L AE G +S A+ T + Sbjct: 264565 LSVVVCGHVDAGKSTTCGHLIFKQGGINPREMEKLNELAAEKGKSSFGFAYYLDTCKEE- 264741 Query: 55 RRNTLDLGFSTMTSLSGR-RLALIDCPGHSGLIRAVLAASTVFDMAIVII---------- 103 R + + +T + + ++D PGH I+ ++ S D+ ++++ Sbjct: 264742 RERGVTIQCNTKEFFTEKYHYTIVDAPGHKDYIKNMITGSATADVGMLLVPAEKGGFEAA 264921 Query: 104 ----DVVAGI-QPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVR--KGLKS 156 D G+ + QT +H L ++++ +NK D K L+ Sbjct: 264922 IAKADAKLGVDEGQTRQHARLLYLLGVEQILVGINKMDACNWSEERFLEIKDEFVKMLQM 265101 Query: 157 MGVDENS-PIVEMSLADGYFKEEMLQNLKL-----------------------AIESRIF 192 +G P + S G + + K A+ + I Sbjct: 265102 IGFKPKKVPFIPYSGFHGDNLVDPVDPAKAPWYKGWSANQTPKKQITGFTIVEALNNYIT 265281 Query: 193 EPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEK-RRVKTLETW 251 PKR+ + + + + + IKG G ++ GTV +G LR ++ F N K +++ ++E Sbjct: 265282 PPKREPDAALRLPVSNIYNIKGVGQIICGTVEQGTLRPGDQVGFVPSNLKGKKIFSIEQH 265461 Query: 252 K 252 K Sbjct: 265462 K 265464 >scaffold_9 Length = 2734635 Score = 43.5 bits (101), Expect = 0.001 Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 62/301 (20%) Frame = +2 Query: 14 LNLGILGHVDSGKTT-------------------LTRRIAELGSTSAFDAHATSTTTDGI 54 L++ + GHVD+GK+T L AE G +S A+ T + Sbjct: 1821563 LSVVVCGHVDAGKSTTCGHLIFKQGGINPREMEKLNELAAEKGKSSFGFAYYLDTCKEE- 1821739 Query: 55 RRNTLDLGFSTMTSLSGR-RLALIDCPGHSGLIRAVLAASTVFDMAIVII---------- 103 R + + +T + + ++D PGH I+ ++ S D+ ++++ Sbjct: 1821740 RERGVTIQCNTKEFFTEKYHYTIVDAPGHKDYIKNMITGSATADVGMLLVPAEKGGFEAA 1821919 Query: 104 ----DVVAGI-QPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVR--KGLKS 156 D G+ + QT +H L ++++ +NK D K L+ Sbjct: 1821920 IAKADAKLGVDEGQTRQHARLLYLLGVEQILVGINKMDACNWSEERFLEIKDEFVKMLQM 1822099 Query: 157 MGVDENS-PIVEMSLADGYFKEEMLQNLKL-----------------------AIESRIF 192 +G P + S G + + K A+ + I Sbjct: 1822100 IGFKPKKVPFIPYSGFHGDNLVDPVDPAKAPWYKGWSANQTPKKQITGFTIVEALNNYIT 1822279 Query: 193 EPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEK-RRVKTLETW 251 PKR+ + + + + + IKG G ++ GTV +G LR ++ F N K +++ ++E Sbjct: 1822280 PPKREPDAALRLPVSNIYNIKGVGQIICGTVEQGTLRPGDQVGFVPSNLKGKKIFSIEQH 1822459 Query: 252 K 252 K Sbjct: 1822460 K 1822462 Score = 35.0 bits (79), Expect = 0.33 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -1 Query: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT-AEHLLLASKFCPNRVIIVL 132 L +D PGHS V + + A++++D GIQ QT + S P VI+ L Sbjct: 234039 LNCVDTPGHSDFSSEVARSLSFVQGAVLLLDAAQGIQAQTWTVYEKAKSMTNPPEVILAL 233860 Query: 133 NKCDL 137 K DL Sbjct: 233859 TKIDL 233845 >scaffold_5 Length = 3184085 Score = 38.1 bits (87), Expect = 0.039 Identities = 41/156 (26%), Positives = 58/156 (37%), Gaps = 44/156 (28%) Frame = +2 Query: 25 GKTTLTRRIAE----LGSTSAFDAHATSTTTDGIRRNTL------------DLGFSTMTS 68 GKTTLT + + + S +A A T T D R ++G Sbjct: 244277 GKTTLTDSLVQKAGIISSKAAGGARYTDTRADEAERGITIKSTGISMFFEYEMGAGEAAG 244456 Query: 69 LSGRRLA--------------------------LIDCPGHSGLIRAVLAASTVFDMAIVI 102 LS LA LID PGH V AA V D A+V+ Sbjct: 244457 LSAEELAELKQNIADKLDDEQNVQISERSYLINLIDSPGHVDFSSEVTAALRVTDGALVV 244636 Query: 103 IDVVAG--IQPQTAEHLLLASKFCPNRVIIVLNKCD 136 +D + G +Q +T LA + P ++++NK D Sbjct: 244637 VDTIDGVCVQTETVLRQALAERVKP---VLMVNKVD 244735 >scaffold_71 Length = 263701 Score = 37.0 bits (84), Expect = 0.086 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 36/161 (22%) Frame = -2 Query: 12 GPLNLGILGHVDSGKTTLTRRI---AELGSTSAFDAHATS-------------------- 48 G N+ I+ HVD GKTTL ++ A +T +H Sbjct: 244206 GVRNVAIIAHVDHGKTTLVDQLLRSAAKTTTKTAKSHNDGSNNGEDDTTERLLDSGDLEK 244027 Query: 49 ----TTTDGIRR---------NTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTV 95 T T + R NT D G S+ T ++ L+D PGH+ V ++ Sbjct: 244026 ERGITITSKVTRIDEYYPTTNNTTDGGNSSSTIIN-----LVDTPGHADFCGEVDRILSL 243862 Query: 96 FDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCD 136 D +++D G QT +++L + +++VLNK D Sbjct: 243861 VDGVCLVVDAGEGPMAQT-KYVLSRALQARLPIVVVLNKVD 243742 >scaffold_28 Length = 785617 Score = 33.9 bits (76), Expect = 0.73 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 27/146 (18%) Frame = -3 Query: 18 ILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSG------ 71 I+GHVD GKTTL + + ++N+ + +++G Sbjct: 23294 IMGHVDHGKTTLMDALRRRSQEQQRQRKKGTKPKSSKKKNSKNSALGNTKNIAGTEAGGI 23115 Query: 72 ---------------RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAE- 115 ++ +D PGH+ + S D+ ++++ GI QT E Sbjct: 23114 TQIISAFQVDLDGQDEKITFLDTPGHAAFKAMRQSGSHAADVIVLVVAADDGISEQTVEI 22935 Query: 116 -----HLLLASKFCPNRVIIVLNKCD 136 ++ S +++ +NK D Sbjct: 22934 INFYKSIVKGSSDSGISMVVAVNKID 22857 >scaffold_17 Length = 1246618 Score = 31.6 bits (70), Expect = 3.6 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 37/135 (27%) Frame = +1 Query: 16 LGILGHVDSGKTTLTRRIAE--LGSTSAFD------------------------AHATST 49 + I+GH+ GKTT + E L +T +D ++AT+T Sbjct: 734608 IAIVGHLHHGKTTFIDTLMEPTLVTTDQWDPLFSSSEDLLTDNNMHDTIKNKSSSNATTT 734787 Query: 50 T--TD---GIRRNTLDLGFSTMT-SLSGRR-----LALIDCPGHSGLIRAVLAASTVFDM 98 TD R + L +T +LS R + ++DCPGH +AA D Sbjct: 734788 LHYTDIWKSERERQMSLSSCPITLALSDTRGKNYAVTIMDCPGHVQFHDESVAACKAMDG 734967 Query: 99 AIVIIDVVAGIQPQT 113 I+ +DV+ GI T Sbjct: 734968 VILCVDVIEGIMIHT 735012 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,732,392 Number of Sequences: 271 Number of extensions: 487019 Number of successful extensions: 2085 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 1694 Number of HSP's gapped (non-prelim): 871 length of query: 500 length of database: 26,846,802 effective HSP length: 111 effective length of query: 389 effective length of database: 26,816,721 effective search space: 10431704469 effective search space used: 10431704469 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)