TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ... 94 2e-19 gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced ... 82 1e-15 gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced ... 65 2e-10 gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ... 56 7e-08 gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 51 2e-06 gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 49 7e-06 gi|328871053|gb|GL883014.1| Dictyostelium fasciculatum unplaced ... 48 2e-05 gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ... 47 4e-05 gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ... 39 0.007 gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ... 35 0.13 gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced ... 30 4.1 >gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun sequence Length = 2750715 Score = 94.4 bits (233), Expect = 2e-19 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 14/235 (5%) Frame = +2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSA---FDAHATSTTTDGIRRNTLDLGFSTMTSLS 70 +N+G +GHVD GKTTLT I + S F ++A + R + + S + S Sbjct: 2516063 VNVGTIGHVDHGKTTLTAAITKTLSDRGLANFKSYAQIDKSPEERSRGITITASHIEYES 2516242 Query: 71 -GRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVI 129 R A IDCPGH I+ ++ + D AI+++ G Q QT EH++L+ + ++ Sbjct: 2516243 TNRHYAHIDCPGHQHYIKNMITGAAQMDGAILVVSAPDGPQEQTREHVILSREVGIPAIV 2516422 Query: 130 IVLNKCDLXXXXXXXXXXXXVRKGLKSMGVD-ENSPIVEMSLADGYFKEE---------M 179 + LNK D VR+ L G D E + V+ + A +++ Sbjct: 2516423 VFLNKMDNADPDLVEIVEMEVRELLSKYGFDGEGTSFVKGAAAVALAEDDASATEYGRHA 2516602 Query: 180 LQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEI 234 + L ++++I P R + FL+ ++ F+I G+GTV TG + +GV+++ E+ Sbjct: 2516603 IDKLVEILDTKIPLPNRAIDKPFLMPVEEVFSISGRGTVATGRIEQGVVKVGDEV 2516767 Score = 50.4 bits (119), Expect = 3e-06 Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 12/134 (8%) Frame = +1 Query: 15 NLGILGHVDSGKTTLT----RRIAELGSTSAFDAHATSTTTDGIRRNT------LDLGFS 64 N+ ++ HVD GKTTL+ R + D S D I R + L F Sbjct: 479998 NISVIAHVDHGKTTLSDSLVARAGIIPEKMQGDVRFLSARKDEIARGITIKSSGVSLYFE 480177 Query: 65 TMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTAEHLLLASK 122 S + LID PGH V AA V D A+V++D V G +Q +T +A K Sbjct: 480178 HGPDKSPHLINLIDSPGHVDFSSEVTAALRVTDGALVVVDSVEGVCVQTETVLRQAVAEK 480357 Query: 123 FCPNRVIIVLNKCD 136 P + +NK D Sbjct: 480358 IVP---VFFINKFD 480390 >gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-285a01.f1-5, whole genome shotgun sequence Length = 1327167 Score = 81.6 bits (200), Expect = 1e-15 Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 17/119 (14%) Frame = +2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTS----- 68 +N+GI+GHVDSGKT+L + ++ ST+A D S R TLDLGFS+ Sbjct: 719501 INVGIMGHVDSGKTSLAKVLSTSLSTAALDKSPASQE----RGITLDLGFSSFNVDVASH 719668 Query: 69 --LSGR----------RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAE 115 LS R + L+DCPGH+ LIR ++ S + DM ++ID+ GIQ QTAE Sbjct: 719669 PLLSQRSEIANHYDRVQFTLVDCPGHASLIRTIIGGSQIIDMMFLVIDINKGIQTQTAE 719845 Score = 76.3 bits (186), Expect = 5e-14 Identities = 36/122 (29%), Positives = 64/122 (52%) Frame = +1 Query: 194 PKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKX 253 PKRD++G FL DHCF IKGQG+VLTGTV++G + +N ++ P LN ++++K+++ + Sbjct: 720307 PKRDDQGTFLFEFDHCFQIKGQGSVLTGTVLKGSIEINQTVQIPQLNLEKKIKSMQMFHK 720486 Query: 254 XXXXXXXXXXXXFLVAPSFDEHRFSRCICGPLGTLKSTKFVLATVEPIQFFRKSINSKSK 313 V D R + T+ + ++E ++F++ + + S Sbjct: 720487 PVKKVVQGDRAGICVT-QLDSKLLERGLLCTPKTVPLLNGAIISIEKVRFYKNLVKTNSH 720663 Query: 314 IH 315 H Sbjct: 720664 FH 720669 >gi|328873752|gb|GL883009.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-33e01.r1-3, whole genome shotgun sequence Length = 1429294 Score = 64.7 bits (156), Expect = 2e-10 Identities = 68/275 (24%), Positives = 107/275 (38%), Gaps = 39/275 (14%) Frame = +3 Query: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54 +N+ ++GHVD+GK+T T + AE+G S A Sbjct: 632352 INIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEAAEMGKQSFKYAWVMDKLKAER 632531 Query: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108 R T+D+ + +ID PGH I+ ++ ++ D A+++I + AG Sbjct: 632532 ERGITIDIALWKFETPK-YYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASPTGEFEAG 632708 Query: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLKSM--GVDENSP 164 I QT EH LLA ++I+ +NK D + K S + N Sbjct: 632709 IAKNGQTREHALLAFTLGVRQMIVAINKMDEKSTNYSQARYDEIVKETSSFIKKIGYNPE 632888 Query: 165 IVEMSLADGYFKEEMLQNLK----------LAIESRIFEPKRDEEGEFLIAIDHCFAIKG 214 V G+ + ML+ L I EPKR + I + + I G Sbjct: 632889 KVSFIPISGWNGDNMLERSPHMAWYKGPTLLEALDAIVEPKRPVDKPLRIPLQDVYKIGG 633068 Query: 215 QGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 GTV G V G+L+ + F N+ VK++E Sbjct: 633069 IGTVPVGRVETGILKPGMNVTFSPANQTTEVKSVE 633173 >gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence Length = 1919465 Score = 55.8 bits (133), Expect = 7e-08 Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 10/131 (7%) Frame = +1 Query: 16 LGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTT---------TDGIRRNTLDLGFSTM 66 L ILGHVD+GKT+L +I ST+ A T + IR DL Sbjct: 1031839 LCILGHVDTGKTSLLDKIR---STNVQGGEARGITQQIGASFIPVENIRDQAKDLAERLK 1032009 Query: 67 TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCP 125 L LID PGH S + D+AI++ID++ G++ QT E + LL + P Sbjct: 1032010 FEFKLPGLLLIDTPGHESFNNLRSRGSGLCDLAILVIDIMHGLEAQTIESINLLRMRKTP 1032189 Query: 126 NRVIIVLNKCD 136 I+ LNK D Sbjct: 1032190 --FIVALNKVD 1032216 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 50.8 bits (120), Expect = 2e-06 Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 2/215 (0%) Frame = -3 Query: 18 ILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDG-IRRNTLDLG-FSTMTSLSGRRLA 75 I+GH+D GKT+L D S G R T +G F + + Sbjct: 2211959 IVGHIDHGKTSL------------LDYMRKSNVVQGEAGRITQHIGAFEVTLPSTQEHIT 2211816 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKC 135 +D PGH+ + + + D+AI+I+ V G+Q QT E + A + I+ LNK Sbjct: 2211815 FMDTPGHAAFSQMRVRGVSTTDIAILIVAVDDGVQEQTKE-AIRAIQAAKIPYIVALNKI 2211639 Query: 136 DLXXXXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPK 195 D + G+ G+ + P VE+S G +++ + + + Sbjct: 2211638 DKPGVDKELAKRQLLENGVLLDGMGGDIPFVEISALTGQGIDQLEETIVFLSKYLELRAP 2211459 Query: 196 RDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRL 230 RD E + I+ F I +G T V G L++ Sbjct: 2211458 RDVPAE-CVVIESTF-IPKRGVAATVLVKAGTLKV 2211360 Score = 46.6 bits (109), Expect = 4e-05 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 25/149 (16%) Frame = +2 Query: 14 LNLGILGHVDSGKTTLT------------RRIAE-------LGSTSAFDAHATSTTTDGI 54 LN+ ++GHVD+GK+T R IA+ +G S A T+ Sbjct: 2511854 LNMVVIGHVDAGKSTTMGHLLFKVGAVDQRTIAKFERESLAIGKGSFHFAWVLDEHTEER 2512033 Query: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII---DVVAGI- 109 R T+D+ + RR+ L+D PGH + +++ +T D+ +++I + +G Sbjct: 2512034 ERGVTMDVCVRYFET-KHRRVTLLDAPGHRDFVPNMISGATQADVGVLLINASEFESGFC 2512210 Query: 110 -QPQTAEHLLLASKFCPNRVIIVLNKCDL 137 + QT EH +LA ++I+ +NK D+ Sbjct: 2512211 EEGQTREHAVLAKSLGIVQLIVAINKMDM 2512297 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Frame = -1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGI--RRNTLDLGFSTMTSLSGR 72 N+ I+ HVD GKT++ ++ T + ++ + R + +T + Sbjct: 2560675 NVAIIAHVDHGKTSMVDQLLRQSGTLKDTQNERVMDSNALEKERGITIMAKNTSLNFKDY 2560496 Query: 73 RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVL 132 +L ++D PGH V ++ D ++++D G+ QT + +L + R I+V+ Sbjct: 2560495 KLNIVDTPGHGDFGGEVERVLSMVDGVVLLVDATEGVMAQT-KFVLSKALAAGLRPIVVI 2560319 Query: 133 NKCD 136 NK D Sbjct: 2560318 NKMD 2560307 Score = 30.8 bits (68), Expect = 2.4 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -3 Query: 17 GILGHV-DSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLA 75 GI G V D G T LTR A +GSTS T +G+ + L L T+L + Sbjct: 2539682 GIFGRVEDDGGTILTRDQASIGSTSYSVYIGTRGIEEGVHISNLSLHQLEFTNLFAKLFT 2539503 Query: 76 LID 78 +D Sbjct: 2539502 SVD 2539494 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 49.3 bits (116), Expect = 7e-06 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 6/105 (5%) Frame = -2 Query: 15 NLGILGHVDSGKTTLTRRIAELGST--SAFDAHATSTTTDGI---RRNTLDLGFSTMT-S 68 N+GI+ HVD+GKTT R+ + H T D + R + + +T+T Sbjct: 2153836 NIGIIAHVDAGKTTTCERMLFYSGEIKRIGEVHRGDTVMDYLKMERERGITITAATITFP 2153657 Query: 69 LSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 R+ L+D PGH V + V D + I D VAG+Q Q+ Sbjct: 2153656 WDNHRINLVDTPGHVDFTVEVERSVRVMDGTVAIFDAVAGVQAQS 2153522 Score = 47.0 bits (110), Expect = 3e-05 Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 20/142 (14%) Frame = +1 Query: 15 NLGILGHVDSGKTTLT----RRIAELGSTSAFDAHATSTTTDG------IRRNTLDLGFS 64 N+ ++ HVD GKTTL+ +R + A D ST D I+ +++ L F Sbjct: 1717342 NMSVIAHVDHGKTTLSDSLIQRAGIIAEKVAGDMRYMSTRADEQERGITIKASSVSLHFE 1717521 Query: 65 TMTS--------LSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG--IQPQTA 114 + LID PGH V AA V D A+V+ID V G +Q +T Sbjct: 1717522 ITEKDKLPPGCVSPSFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCVQTETV 1717701 Query: 115 EHLLLASKFCPNRVIIVLNKCD 136 +A + P ++ +NK D Sbjct: 1717702 LRQAVAERIKP---VLFVNKVD 1717758 Score = 38.1 bits (87), Expect = 0.015 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Frame = +1 Query: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQ-PQTAEHLLLASKFCP 125 +R ++D PGH + +++ + D+AI++I + AG+ QT EH LA Sbjct: 2852959 KRYTILDAPGHKAYVPNMISGAAQADVAILVISSKKGEFEAGVDGGQTIEHARLAKMIGI 2853138 Query: 126 NRVIIVLNKCD 136 +I+++NK D Sbjct: 2853139 KHLIVLVNKMD 2853171 >gi|328871053|gb|GL883014.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-11f03.f1-5, whole genome shotgun sequence Length = 911335 Score = 47.8 bits (112), Expect = 2e-05 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 11/110 (10%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGI--RRNTLDL---------GF 63 N+GI H+DSGKTTLT RI L T DG+ + +++DL Sbjct: 777650 NIGISAHIDSGKTTLTERI--LFYTGRIKEIHDVKGKDGVGAKMDSMDLEREKGITIQSA 777477 Query: 64 STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 +T + +ID PGH V A V D A++++ V+G+Q QT Sbjct: 777476 ATYCKWKENHVNIIDTPGHVDFTIEVERALRVLDGAVLVMCGVSGVQSQT 777327 >gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence Length = 1908399 Score = 46.6 bits (109), Expect = 4e-05 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 9/164 (5%) Frame = -3 Query: 81 GHSGLIRAVLAASTVFDMAIVIIDVVAGI-QPQTAEHLLLASKFCPNRVIIVLNKCDLXX 139 GH L+ +L + V D A+++I QPQT+EH+ +II+ NK DL Sbjct: 1829905 GHDVLMATMLNGAAVMDAALLLIAGNESCPQPQTSEHIAAIEIMNLKNIIILQNKIDLVK 1829726 Query: 140 XXXXXXXXXXVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEE 199 + K ++ V E +PI+ +S Y E + + I +I P RD Sbjct: 1829725 EAAAKEQYGQILKFIQGT-VAEGAPIIPISAQMKYNIEVICE----YIVKKIPIPVRDFT 1829561 Query: 200 GEFLIAIDHCFAIKG--------QGTVLTGTVIRGVLRLNTEIE 235 + + + F + +G V G++++GVL++ E+E Sbjct: 1829560 SDPRLIVIRSFDVNKPGARVDDLKGGVAGGSILKGVLKIGDEVE 1829429 >gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence Length = 3468650 Score = 39.3 bits (90), Expect = 0.007 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 10/132 (7%) Frame = +3 Query: 15 NLGILGHVDSGKTT----LTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSL- 69 N+ ++G++ SGK+ L + E T A + T T D R + + + M+ + Sbjct: 3171552 NVCLVGNLHSGKSKFMDMLVNQTHERKWTHAKASRYTDTRNDEQERG-MSIKSAPMSLIL 3171728 Query: 70 -----SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFC 124 + ++D PGH VLA+ + D AIV++D + G+ QT E L+ + Sbjct: 3171729 PNSNDKSYLVNVLDTPGHVNFTDEVLASLRLCDAAIVVVDALEGVMMQT-ERLIKLAVQE 3171905 Query: 125 PNRVIIVLNKCD 136 + +V+NK D Sbjct: 3171906 GLAIAVVINKVD 3171941 Score = 35.0 bits (79), Expect = 0.13 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +1 Query: 76 LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPN-RVIIVLNK 134 LID PGH V A + D A+V++D + G+ QT H +L + R +V+NK Sbjct: 1069501 LIDSPGHVDFSSEVSTAVRITDGALVLVDCIEGVCIQT--HAVLRQAYQEKVRPCLVINK 1069674 Query: 135 CD 136 D Sbjct: 1069675 ID 1069680 Score = 35.0 bits (79), Expect = 0.13 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 11/75 (14%) Frame = +3 Query: 176 KEEMLQNLKLAIESRIFEP------KRDEEGE-----FLIAIDHCFAIKGQGTVLTGTVI 224 KE+ L NL++ I I E K +EEG+ L +D F IK Q +++GT+ Sbjct: 1790010 KEKSL-NLQVIINCTIIEKDEEKEKKEEEEGKDQDLSTLSCLDIKFDIKNQNIMVSGTIT 1790186 Query: 225 RGVLRLNTEIEFPAL 239 RGV + EI P L Sbjct: 1790187 RGVKEIQKEIVVPKL 1790231 >gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun sequence Length = 1770755 Score = 35.0 bits (79), Expect = 0.13 Identities = 22/64 (34%), Positives = 32/64 (50%) Frame = +2 Query: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLN 133 L LID PGH V + AI+++D G+Q QT + LA + V+ ++N Sbjct: 1139510 LNLIDTPGHVDFTYEVSRSLMACQGAILVVDACQGVQAQTMANYYLALE-AGLEVVPLIN 1139686 Query: 134 KCDL 137 K DL Sbjct: 1139687 KIDL 1139698 >gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-143d02.r1-5, whole genome shotgun sequence Length = 656888 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2 Query: 358 IFLPENYSNPFMAARLEQQPGSGCRFAFSGIFS-QILPENGKNL 400 IFLPEN +PF+ + +P S R A G+ ++P + +N+ Sbjct: 543791 IFLPENLGSPFLLRSIPVRPASEVR*AIDGMRRYAMIPAHNENI 543922 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,612,420 Number of Sequences: 25 Number of extensions: 166510 Number of successful extensions: 676 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 510 Number of HSP's gapped (non-prelim): 342 length of query: 500 length of database: 10,339,736 effective HSP length: 104 effective length of query: 396 effective length of database: 10,337,136 effective search space: 4093505856 effective search space used: 4093505856 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)