TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Caenorhabditis elegans # Complete (500 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig741 | | 1 to 201246 142 5e-34 Cf_Contig1044 | | 1 to 114976 101 2e-21 Cf_Contig900 | | 1 to 239103 101 2e-21 Cf_Contig606 | | 1 to 135677 60 3e-09 Cf_Contig1068 | | 1 to 155071 57 4e-08 Cf_Contig246 | | 1 to 1408 57 5e-08 Cf_Contig960 | | 1 to 129949 55 1e-07 Cf_Contig870 | | 1 to 62773 55 2e-07 Cf_Contig1069 | | 1 to 371363 48 2e-05 Cf_Contig599 | | 1 to 11661 48 2e-05 Cf_Contig1059 | | 1 to 41438 45 2e-04 Cf_Contig968 | | 1 to 318049 42 0.001 Cf_Contig969 | | 1 to 310710 41 0.003 Cf_Contig1054 | | 1 to 431369 31 2.9 Cf_Contig515 | | 1 to 26542 30 4.9 Cf_Contig899 | | 1 to 170923 29 8.3 Cf_Contig109 | | 1 to 2703 29 8.3 >Cf_Contig741 | | 1 to 201246 Length = 201246 Score = 142 bits (359), Expect = 5e-34 Identities = 104/362 (28%), Positives = 161/362 (44%), Gaps = 46/362 (12%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTM------- 66 +N+G+LGHVDSGKT L + ++ ST+AFD S + R TLDLGFS Sbjct: 127315 VNVGLLGHVDSGKTALAKALSRTASTAAFDKSPQSQS----RGITLDLGFSACEVAQDDS 127482 Query: 67 ---------TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL 117 +L + L+DCPGH+ LIR V+ + + D +++ID G+Q QTAE L Sbjct: 127483 DDARAVLRAANLDKVQCTLVDCPGHASLIRTVVGGAQIIDAMVLVIDATKGMQAQTAECL 127662 Query: 118 LLASKFCPNRVIIVLNKCD----------------------LXXXXXXXXXXXXVRKGLK 155 +L + +++ LNK D L V Sbjct: 127663 VL-GEVLAKPLVVALNKVDAVQGATLAEKTAAVAAMKRKLQLTFRRTRWPTVTVVEVAAA 127839 Query: 156 SMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGE----FLIAIDHCFA 211 V + S +A Y +L + A++ + + EGE F + +DHCFA Sbjct: 127840 PRDVADGSSSSSSGMAAPYNVSALLPQVLRAVDLAALKAAKAREGERPERFYMLVDHCFA 128019 Query: 212 IKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKXXXXXXXXXXXXXFLVAPS 271 ++GQGTV TGTV+ G++R+ + P L R+VK L+ + VA Sbjct: 128020 VRGQGTVFTGTVVAGMVRVGDTVLVPDLQTTRKVKGLQVFHQPVETARSGDRVGLCVA-Q 128196 Query: 272 FDEHRFSR-CICGPLG---TLKSTKFVLATVEPIQFFRKSINSKSKIHVAVAFETVMAEC 327 FD R +C G TL ST ++A V +++ ++ +K H+ + TVM Sbjct: 128197 FDPASMERGVLCSSAGSERTLVSTSQLIAQVHKVRYHPFLADTHTKFHITIGHATVMGTM 128376 Query: 328 QF 329 ++ Sbjct: 128377 RY 128382 >Cf_Contig1044 | | 1 to 114976 Length = 114976 Score = 101 bits (251), Expect = 2e-21 Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 12/242 (4%) Frame = +1 Query: 14 LNLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSL 69 L +G +GHVD GKTTLT I A+ G A D A + + R Sbjct: 19003 LIIGTIGHVDHGKTTLTSAITTVLAKSGRAQALDYFAIDKSPEEKSRKITINATHVEYES 19182 Query: 70 SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVI 129 R IDCPGH ++ ++ + D I+++ G+ PQT EHLL+ S+ ++ Sbjct: 19183 DKRHYGHIDCPGHMDFVKNMITGAAQMDGGIIVVAATDGVMPQTREHLLICSQIGLPALV 19362 Query: 130 IVLNKCDLXXXXXXXXXXXXVRKGLKSMGVD-ENSPIVEMSL-----ADGYFKEEMLQNL 183 +NK D+ VR+ L+ E +PIV S D ++ +L+ + Sbjct: 19363 GFINKVDMTDDETCDLVDMEVREQLEKYKFPAEETPIVRGSALKALEGDAKYEAAILELV 19542 Query: 184 KLAIESRIFEPKRDEEGEFLIAIDHCFAI--KGQGTVLTGTVIRGVLRLNTEIEFPALNE 241 K + I +P R+ + FL+AI+H + I + ++TG V +GVL+LNTE E + Sbjct: 19543 K-KCDEWIPDPPRNTDKPFLMAIEHVYEIGKDKKSVIVTGRVDQGVLKLNTEAELAGFSA 19719 Query: 242 KR 243 K+ Sbjct: 19720 KK 19725 >Cf_Contig900 | | 1 to 239103 Length = 239103 Score = 101 bits (251), Expect = 2e-21 Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 12/242 (4%) Frame = -3 Query: 14 LNLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSL 69 L +G +GHVD GKTTLT I A+ G A D A + + R Sbjct: 70450 LIIGTIGHVDHGKTTLTSAITTVLAKSGRAQALDYFAIDKSPEEKSRKITINATHVEYES 70271 Query: 70 SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVI 129 R IDCPGH ++ ++ + D I+++ G+ PQT EHLL+ S+ ++ Sbjct: 70270 DKRHYGHIDCPGHMDFVKNMITGAAQMDGGIIVVAATDGVMPQTREHLLICSQIGLPALV 70091 Query: 130 IVLNKCDLXXXXXXXXXXXXVRKGLKSMGVD-ENSPIVEMSL-----ADGYFKEEMLQNL 183 +NK D+ VR+ L+ E +PIV S D ++ +L+ + Sbjct: 70090 GFINKVDMTDDETCDLVDMEVREQLEKYKFPAEETPIVRGSALKALEGDAKYEAAILELV 69911 Query: 184 KLAIESRIFEPKRDEEGEFLIAIDHCFAI--KGQGTVLTGTVIRGVLRLNTEIEFPALNE 241 K + I +P R+ + FL+AI+H + I + ++TG V +GVL+LNTE E + Sbjct: 69910 K-KCDEWIPDPPRNTDKPFLMAIEHVYEIGKDKKSVIVTGRVDQGVLKLNTEAELAGFSA 69734 Query: 242 KR 243 K+ Sbjct: 69733 KK 69728 >Cf_Contig606 | | 1 to 135677 Length = 135677 Score = 60.5 bits (145), Expect = 3e-09 Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 8/127 (6%) Frame = -2 Query: 18 ILGHVDSGKTTLTRRI-------AELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLS 70 +LGHVD+GKT+L RI E G + AT + + +T +L L Sbjct: 66061 VLGHVDTGKTSLLDRIRSTNVQGGEAGGITQ-QIGATFFPQEKLVADTAELNKRYNYKLD 65885 Query: 71 GRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASKFCPNRVI 129 L +ID PGH S++ D+AI+++D++ G++ QT E + LL K CP I Sbjct: 65884 VPGLLVIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTRESIRLLREKRCP--FI 65711 Query: 130 IVLNKCD 136 I LNK D Sbjct: 65710 IALNKVD 65690 Score = 46.6 bits (109), Expect = 5e-05 Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 23/221 (10%) Frame = -2 Query: 37 GSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAAST-- 94 G +A A A + ++ R+ T + S S + + L D GH ++ + T Sbjct: 34672 GGAAATPAAAAAASSHPTRQYTPQ----ELASRSSKVVTLYDLAGHERYLKTTVLGMTRN 34505 Query: 95 VFDMAIVIIDVVAGIQPQTAEHLLLA--------------SKFCPN-RVIIVLNKCDLXX 139 + D A +++ GIQ T EHL L PN R + N L Sbjct: 34504 MPDYACIVVSANNGIQRMTKEHLALCLALKLPFYIVVTRIDSTPPNVREETLANIHKLLK 34325 Query: 140 XXXXXXXXXXVRK------GLKSMGVDENSPIVEMSLADGYFKEEMLQNLKLAIESRIFE 193 VR+ K++ D +PI E+S G ++LQ + L + + Sbjct: 34324 IPTVRKLPYPVRRHDEVILAAKNLRHDRIAPIFEVSNVTGIGIADVLQFINLLPVRKDWR 34145 Query: 194 PKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEI 234 R + E + ID F + G GTV+ G + +GV R+N + Sbjct: 34144 LARGQPKEMI--IDSTFFVTGVGTVVGGIITQGVFRVNDTV 34028 >Cf_Contig1068 | | 1 to 155071 Length = 155071 Score = 57.0 bits (136), Expect = 4e-08 Identities = 61/266 (22%), Positives = 106/266 (39%), Gaps = 44/266 (16%) Frame = -2 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTM------- 66 +N+G +GHV GK+T+ R ++ + T F A + T+ LG++ Sbjct: 99570 INIGTIGHVAHGKSTVVRALSGV-KTQKFHREA-------VMNITIHLGYANAKVYQCGT 99415 Query: 67 -------------------------TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIV 101 T R + +DCPGH L+ +L + + D A++ Sbjct: 99414 CPRPGCYQTYPSSQPDSTPCPTCGATMTLKRHFSFVDCPGHDVLMATMLNGAAIMDAALL 99235 Query: 102 IIDVVAGI-QPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLKSMGVD 160 +I QPQT EHL + +I++ NK DL +R L ++ + Sbjct: 99234 LIAANESFPQPQTLEHLKAVEIMKLHHLIVLQNKIDLVGEVKAHDQYRQIRAYLDNIAL- 99058 Query: 161 ENSPIVEMSLADGYFKEEMLQNLKLAIE--SRIFEPKRDEEGEFLIAIDHCFAIKG---- 214 N PIV +S ++ +N+ +E I P+R + + + F I Sbjct: 99057 -NVPIVPIS-------AQLKRNVDYLLEYLLHIPMPQRQLKTPVRMTVVRSFDINKPGEG 98902 Query: 215 -----QGTVLTGTVIRGVLRLNTEIE 235 +G V GTV +GV+++ +E Sbjct: 98901 DIENLKGGVAGGTVTQGVIQVGQVVE 98824 Score = 53.9 bits (128), Expect = 3e-07 Identities = 65/277 (23%), Positives = 103/277 (37%), Gaps = 46/277 (16%) Frame = -3 Query: 14 LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTM------- 66 +N+G +GHV GK+T+ R ++ + T F A + T+ LG++ Sbjct: 102839 INIGTIGHVAHGKSTVVRALSGV-KTQKFHREA-------VMNITIHLGYANAKVYQCGT 102684 Query: 67 -------------------------TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIV 101 T R + +DCPGH L+ +L + + D A++ Sbjct: 102683 CPRPGCYQTYPSSQPDSTPCPTCGATMTLKRHFSFVDCPGHDVLMATMLNGAAIMDAALL 102504 Query: 102 IIDVVAGI-QPQTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKGLKSMGVD 160 +I QPQT EHL A ++++ NK DL + L + Sbjct: 102503 LIAANESFPQPQTLEHLAAAEMIGVPSLLVLQNKVDLVSKAHAAAQYAIIHHYLTTKTAY 102324 Query: 161 ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIK-----GQ 215 +P++ + +L L I P+R ++I F + GQ Sbjct: 102323 ARAPVIPICAQKHLNLAYLLDYL-----VHIPLPRRQLRQTPYLSILRSFDVSLPGPAGQ 102159 Query: 216 -------GTVLTGTVIRGVLRLNTEIE-FPALNEKRR 244 G V+ GTV GVL + EIE P L RR Sbjct: 102158 RGCENLKGGVVGGTVAAGVLCVGDEIEIIPGLLTLRR 102048 >Cf_Contig246 | | 1 to 1408 Length = 1408 Score = 56.6 bits (135), Expect = 5e-08 Identities = 68/279 (24%), Positives = 108/279 (38%), Gaps = 43/279 (15%) Frame = -2 Query: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54 +NL ++GHVD+GK+T T + AE+G S A Sbjct: 1386 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAER 1207 Query: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AG 108 R T+D+ S +ID PGH I+ ++ ++ D AI++ID AG Sbjct: 1206 ERGITIDIALWKFESPKSV-FTIIDAPGHRDFIKNMITGTSQADAAILMIDSTQGGFEAG 1030 Query: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLXXXXXXXXXXXXVRKG----LKSMGVD-- 160 I QT EH LLA ++++ NK D + K LK +G + Sbjct: 1029 ISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVQYAQARYEEISKEVGAYLKRVGYNPE 850 Query: 161 ----------ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCF 210 + ++E S ++K L +E+ P R + + + + Sbjct: 849 KVRFIPISGWQGDNMIEKSDNMSWYKGPTLLEALDLLEA----PVRPVDKPLRLPLQDVY 682 Query: 211 AIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLE 249 I G GTV G V GV++ + F N VK++E Sbjct: 681 KIGGIGTVPVGRVETGVMKPGDVVVFAPANVTTEVKSIE 565 >Cf_Contig960 | | 1 to 129949 Length = 129949 Score = 55.5 bits (132), Expect = 1e-07 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 6/128 (4%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIA-ELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRR 73 N+GI+ H+D+GKTT T R+ G T + TTT + D G + ++ R Sbjct: 116641 NIGIVAHIDAGKTTTTERMLFYAGVTKRVGDVDSGTTTTDFMKEEADRGITIQSAAVSLR 116820 Query: 74 -----LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRV 128 + LID PGH V A V D + + D AG+Q Q+ L + KF + Sbjct: 116821 WHDHDVNLIDTPGHVDFTVEVERAMRVVDGVVALFDASAGVQAQSYTVLQQSRKF-HVPL 116997 Query: 129 IIVLNKCD 136 + LNK D Sbjct: 116998 LAFLNKMD 117021 >Cf_Contig870 | | 1 to 62773 Length = 62773 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/110 (31%), Positives = 52/110 (47%) Frame = +2 Query: 13 PLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGR 72 P + I+GHVD GKTTL + + + GI +N +G + + G Sbjct: 44885 PPIVSIMGHVDHGKTTLLDHLRR--------TNVAAGEAGGITQN---VGAFQVKTPDGH 45031 Query: 73 RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASK 122 + ID PGH+ +T DM I+I+ V G+QPQT E + LA + Sbjct: 45032 FITFIDTPGHAAFTAMREVGATTNDMIILIVSAVDGVQPQTREVIELAQR 45181 >Cf_Contig1069 | | 1 to 371363 Length = 371363 Score = 47.8 bits (112), Expect = 2e-05 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 9/108 (8%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDL---------GFST 65 N+GI H+DSGKTTL+ RI T G ++++L +T Sbjct: 275661 NIGISAHIDSGKTTLSERILFYSGRIGKIHEVKGGTEVGATMDSMELEKERGITIRSAAT 275482 Query: 66 MTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 + +ID PGH V A V D AI+++ V G+Q QT Sbjct: 275481 QCRWKNSTINVIDTPGHVDFTIEVERALRVLDGAILLMCAVGGVQSQT 275338 >Cf_Contig599 | | 1 to 11661 Length = 11661 Score = 47.8 bits (112), Expect = 2e-05 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 25/144 (17%) Frame = +2 Query: 18 ILGHVDSGK-TTLTRRIAELGSTSAFDA----------HATS---------TTTDGIRRN 57 + GHVD+GK TTL + LG + + H S + + R Sbjct: 659 VAGHVDAGKSTTLGHLLLLLGRVTMEEVDRNEKNGRSQHKESFKYAWLLDQSEEERRRGV 838 Query: 58 TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AGIQPQ 112 T+D G S + RR+ ++D PGH + +++++T D A+++++ G+Q Sbjct: 839 TIDSG-SFCFETANRRVHILDAPGHKDFVLNMISSATQADAALLVVNAATSEFETGLQHG 1015 Query: 113 TAEHLLLASKFCPNRVIIVLNKCD 136 T EHLL+ +++ +NK D Sbjct: 1016TKEHLLVLKTLGVGSIVVAVNKMD 1087 >Cf_Contig1059 | | 1 to 41438 Length = 41438 Score = 44.7 bits (104), Expect = 2e-04 Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 20/142 (14%) Frame = -3 Query: 15 NLGILGHVDSGKTTLTRRIAELGST----SAFDAHATSTTTDGIRRNTLDLGFSTMTSLS 70 N+ ++ HVD GK+TL+ + A D T D I R ST SL Sbjct: 40680 NMSVIAHVDHGKSTLSDSLVGAAGIIKMEEAGDKRIMDTRADEIARGITIK--STAISLH 40507 Query: 71 GR----------------RLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTA 114 R + LID PGH V AA V D A+V++D V G+ QT Sbjct: 40506 YRVPKEMISDLDDDKRDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT- 40330 Query: 115 EHLLLASKFCPNRVIIVLNKCD 136 E +L + R ++ +NK D Sbjct: 40329 ETVLRQALTERIRPVVFINKVD 40264 >Cf_Contig968 | | 1 to 318049 Length = 318049 Score = 42.4 bits (98), Expect = 0.001 Identities = 35/120 (29%), Positives = 49/120 (40%) Frame = +1 Query: 18 ILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLALI 77 ILGHV GKT L + + H T + IR T+ + G + Sbjct: 60412 ILGHVGHGKTALLDALQDTRIGDEEPHHITQS----IRAFTV-----ASPNQQGTSFTFL 60564 Query: 78 DCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKCDL 137 D PGH + V D I+++ VV G+ QT E + +A VI+V K DL Sbjct: 60565 DSPGHQLFVETRFHLHLVSDFIILVVSVVDGVGAQTHETVKVALN-VDKPVIVVFTKIDL 60741 >Cf_Contig969 | | 1 to 310710 Length = 310710 Score = 40.8 bits (94), Expect = 0.003 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 10/109 (9%) Frame = +1 Query: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGI---RRNTLDLGFSTMTSLSG 71 N+ ++ HVD GKTTL+ + D AT T TD + + + + T + L Sbjct: 273136 NVSVVAHVDHGKTTLSDAMLRFAQLLPADG-ATGTFTDRLQVEKERGITIKAQTCSVLLT 273312 Query: 72 RR-------LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113 +R + LID PGH V + + A +++DV G++ QT Sbjct: 273313 QRGSGTQYLINLIDTPGHVDFQYEVSRSLCASEGAALLVDVRQGVEAQT 273459 >Cf_Contig1054 | | 1 to 431369 Length = 431369 Score = 30.8 bits (68), Expect = 2.9 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Frame = +3 Query: 280 CICGPLGTLKSTKFVLATVEPIQFF----RKSINSKSK 313 C CG LGTL++T +ATV + F RK N+KS+ Sbjct: 135378 CACGRLGTLRNTDLHIATVVSVCNFGTKKRKEGNAKSR 135491 >Cf_Contig515 | | 1 to 26542 Length = 26542 Score = 30.0 bits (66), Expect = 4.9 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -3 Query: 16 LGILGHVDSGKTTLTRR----IAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSG 71 +G+LG G TT+ R IAE TSA +A T + + +TL GF + G Sbjct: 12074 MGVLGGAGLGFTTVRREALTGIAEGPRTSAMEAGGTDLSRSAVAADTLMTGF-----IDG 11910 Query: 72 RRLALID 78 AL++ Sbjct: 11909 APAALVE 11889 >Cf_Contig899 | | 1 to 170923 Length = 170923 Score = 29.3 bits (64), Expect = 8.3 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Frame = -3 Query: 32 RIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLALIDCPGHSGL-----I 86 R+A LG+ SA+D + D + LG S S R LAL GH+ Sbjct: 56468 RLARLGTGSAWDTLSFGQRVDVVEHLLKGLGVSAERIASARTLALQRQMGHTSSDSTDGA 56289 Query: 87 RAVLAAST-----VFDMAIVIIDVVAGIQPQTA 114 A AA+T + D A +++D VA + A Sbjct: 56288 TATTAAATPLVISLKDFAPLLMDGVANTMSEEA 56190 >Cf_Contig109 | | 1 to 2703 Length = 2703 Score = 29.3 bits (64), Expect = 8.3 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = -1 Query: 352 FSFEKSIFLPENYSNPFMAARLEQQPGSGCRFAFSGIFSQILPENGKNLPPRFTRK 407 F ++KSIF Y PF+ R G R+ G+ S+I P NG ++ P RK Sbjct: 414 FLYQKSIFAERPYPRPFLIFR-------GHRWNRKGLNSRIRP-NGAHINPTKERK 271 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,400,108 Number of Sequences: 1089 Number of extensions: 308971 Number of successful extensions: 1648 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 30 Number of HSP's that attempted gapping in prelim test: 1420 Number of HSP's gapped (non-prelim): 467 length of query: 500 length of database: 12,349,441 effective HSP length: 105 effective length of query: 395 effective length of database: 12,235,096 effective search space: 4832862920 effective search space used: 4832862920 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)