TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Caenorhabditis elegans # Complete
         (500 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847609|gb|ADNL01002994.1| Astrammina rara contig00661, who...    26   1.9  
gi|330850434|gb|ADNL01000169.1| Astrammina rara contig00176, who...    24   5.4  
gi|330850550|gb|ADNL01000053.1| Astrammina rara contig00056, who...    24   7.1  

>gi|330847609|gb|ADNL01002994.1| Astrammina rara contig00661, whole
           genome shotgun sequence
          Length = 646

 Score = 25.8 bits (55), Expect = 1.9
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 16  LGILGHVDSGKTTLTRRIAEL 36
           +G+LG   SGKTTL R IA L
Sbjct: 189 IGLLGPSGSGKTTLLRIIAGL 251


>gi|330850434|gb|ADNL01000169.1| Astrammina rara contig00176, whole
           genome shotgun sequence
          Length = 722

 Score = 24.3 bits (51), Expect = 5.4
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +1

Query: 268 VAPSFDEHRFSRCICGPLGTLKS-----TKFVLATVEPI 301
           V PS  E +  RC C PLG+  +     T F++ T   +
Sbjct: 247 VPPSVAERQHGRCPCLPLGSHSTFVRTVTLFIILTASVV 363


>gi|330850550|gb|ADNL01000053.1| Astrammina rara contig00056, whole
            genome shotgun sequence
          Length = 2656

 Score = 23.9 bits (50), Expect = 7.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 343  SLLAPCQVLFSFEKSIFL 360
            SL+ PC+V  SFE  +FL
Sbjct: 1280 SLMTPCEVGGSFEMHLFL 1333


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.322    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 684,316
Number of Sequences: 3231
Number of extensions: 7620
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of query: 500
length of database: 483,365
effective HSP length: 78
effective length of query: 422
effective length of database: 231,347
effective search space: 97628434
effective search space used: 97628434
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)