TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                   219   2e-57

>TcIL3000_10_v2.embl
          Length = 3612457

 Score =  219 bits (558), Expect = 2e-57
 Identities = 141/399 (35%), Positives = 197/399 (49%), Gaps = 11/399 (2%)
 Frame = +1

Query: 41      FEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPPLTSXXXXXXXXXX 100
               FEP  LG    + LT ++ +KG  CK+PQ  LL LL+ +                     
Sbjct: 2071891 FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALLQRV--------------------- 2072007

Query: 101     XXXXXSTRPGPGSAFPSLSIGMDSCVIPLRH-----GGLSLVQTTDFFYPLVEDPYMMGR 155
                    S  PG   A      GMD  ++ L+H       L +V TTDFF+P VEDPY+ G+
Sbjct: 2072008 -----SATPGQKDA------GMDCSIVKLQHKDESGNQLYMVSTTDFFFPSVEDPYLQGQ 2072154

Query: 156     IACANVLSDLYAMGITECDNXXXXXXXXXXXXEKEREKVTPLMIKGFRDXXXXXXXXXXX 215
               I  ANVLSDLY+ GI  CD             + ER+  T  M+KGF D           
Sbjct: 2072155 IGAANVLSDLYSTGIYRCDTVLMLLAASTDMDKTERDICTREMMKGFVDHVRLAGSDVTG 2072334

Query: 216     XXXXXNPWIIIGGVATVVCQQNEFIMPDSAVVGDVLVLTKPLGTQVAANAHQWLDNPEK- 274
                    NPW +IGG+A  V  +++ + P     GD+LVLTKPLG Q+A N  QW+  P   
Sbjct: 2072335 GQTVMNPWPLIGGIAMSVVPESQMVRPTGLRPGDILVLTKPLGCQIAVNLKQWIHRPSPI 2072514

Query: 275     -WNKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLA 333
                 ++I+  +  EE++  Y  A   M  LNR AA LM    AH ATD+TGFGI+GH+ NL 
Sbjct: 2072515 YESRIQGKMDLEEIDELYCAAAEGMKRLNREAARLMCVHKAHGATDVTGFGIIGHATNLG 2072694

Query: 334     KQQKNEVSFVIHNLP-XXXXXXXXXXXXGRFGLLQGTSAETSGGLLICLPREQAARFCSE 392
                 Q+ ++  V+++LP              +F L +G SAETSGGLL+    E        
Sbjct: 2072695 GAQEAKLCLVLNSLPMYKGAVKASRLMDDKFRLFEGYSAETSGGLLVAF--EDVTTAERY 2072868

Query: 393     IKSSKYGEGHQAWIVG--IVEKGNRTARIIDKP-RVIEV 428
               I+  +  +G  AW+VG  +    +  A +++K  ++IEV
Sbjct: 2072869 IRDLRDADGEPAWVVGRVVTRADDSPAAVLEKDYKIIEV 2072985


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,868,791
Number of Sequences: 11
Number of extensions: 135726
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 47
length of query: 452
length of database: 7,429,315
effective HSP length: 101
effective length of query: 351
effective length of database: 7,428,204
effective search space: 2607299604
effective search space used: 2607299604
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)