TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.927 of Sphaeroforma arctica JP610                           87   7e-17

>supercont1.927 of Sphaeroforma arctica JP610
          Length = 30644

 Score = 87.4 bits (215), Expect = 7e-17
 Identities = 41/78 (52%), Positives = 53/78 (67%)
 Frame = +2

Query: 221  NPWIIIGGVATVVCQQNEFIMPDSAVVGDVLVLTKPLGTQVAANAHQWLDNPEKWNKIKM 280
            NPW I+GGVA  V    + I P++A  GDV+VLTKPLGTQ+A N HQWLD P+ W+++K 
Sbjct: 3908 NPWPILGGVAQSVMLATDVITPENARAGDVMVLTKPLGTQLAVNLHQWLDQPKWWDQVKH 4087

Query: 281  VVSREEVELAYQEAMFNM 298
            V+  E V  AY  A  +M
Sbjct: 4088 VIDAETVIRAYNVASASM 4141



 Score = 67.8 bits (164), Expect = 6e-11
 Identities = 29/43 (67%), Positives = 36/43 (83%)
 Frame = +3

Query: 133  GLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDN 175
            G+ +V TTDFFYPLV+DPY  G+IACANVLSD+YA+G  + DN
Sbjct: 2586 GVVMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDN 2714



 Score = 58.9 bits (141), Expect = 3e-08
 Identities = 28/48 (58%), Positives = 35/48 (72%)
 Frame = +1

Query: 301  LNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQKNEVSFVIHNLP 348
            LN   A LMH  NA AATD+TGFGILGH+ NLA+ QK +++  I +LP
Sbjct: 4594 LNMVGAQLMHKHNARAATDVTGFGILGHANNLAQAQKAKLTLRIDSLP 4737



 Score = 41.2 bits (95), Expect = 0.006
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +3

Query: 363  FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGI 409
            F L  G SAETSGGLL+C+    A  FC  I +    EG +A++VG+
Sbjct: 6126 FNLATGYSAETSGGLLMCMAPADADAFCRAIHAE---EGWKAFVVGM 6257


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,771,989
Number of Sequences: 15618
Number of extensions: 640966
Number of successful extensions: 2076
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 890
length of query: 452
length of database: 40,529,447
effective HSP length: 113
effective length of query: 339
effective length of database: 38,764,613
effective search space: 13141203807
effective search space used: 13141203807
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)