TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_49                                                      281   1e-75
PHYCAscaffold_87                                                       30   9.7  

>PHYCAscaffold_49
          Length = 508508

 Score =  281 bits (719), Expect = 1e-75
 Identities = 169/439 (38%), Positives = 226/439 (51%), Gaps = 44/439 (10%)
 Frame = -3

Query: 36    SNYRPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPPLTSXXXXX 95
             +N   F+P +LG    + LT+FS +KG GCK+PQ  LL  L+ L                
Sbjct: 85473 ANAAAFDPTSLGLEADFVLTNFSALKGCGCKLPQAKLLGYLDDLA--------------- 85339

Query: 96    XXXXXXXXXXSTRPGPGSAFPSLSIGMDSCVIPLRHG-GLSLVQTTDFFYPLVEDPYMMG 154
                                 P+ + GMDS V+ + HG  L LV TTDFF+P VEDPY+ G
Sbjct: 85338 ----------------NDLKPNETPGMDSSVVKISHGTDLYLVSTTDFFFPSVEDPYVQG 85207

Query: 155   RIACANVLSDLYAMGITECDNXXXXXXXXXXXXEKEREKVTPLMIKGFRDXXXXXXXXXX 214
             +IACANVLSD YAMG+TE D             EK+R+ VT  MI+GF D          
Sbjct: 85206 KIACANVLSDAYAMGVTEVDTMLMILGVCRDMSEKQRDVVTTQMIRGFNDLARQAHTNVT 85027

Query: 215   XXXXXXNPWIIIGGVA---------------------TVVCQQNEFIMPDSAVVGDVLVL 253
                   NPW I+GGVA                      V   +++ I P++AVVGDV++L
Sbjct: 85026 GGQTVMNPWPIVGGVAMSVRSG**KLSIQHL*LI*D*RVFPAESQIIRPENAVVGDVIIL 84847

Query: 254   TKPLGTQVAANAHQWLDNPEKWNKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMHT-- 311
             TKPLGTQVA N  QW   PE+W +++ +V+ E+ ++A+Q A  +M+ LN  AA +MH   
Sbjct: 84846 TKPLGTQVAVNLFQWKKKPERWQRVESIVTPEDADVAFQMASESMSRLNLNAAKMMHKVR 84667

Query: 312   -------------------FNAHAATDITGFGILGHSQNLAKQQKNEVSFVIHNLPXXXX 352
                                + AH+ATD+TGFGI+ H++N AK Q  +VSF IH LP    
Sbjct: 84666 *VFCLLPFITY*LSLSLC*YGAHSATDVTGFGIVAHARNQAKSQLGDVSFEIHTLPIIKN 84487

Query: 353   XXXXXXXXGR-FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVE 411
                     G  F LL G +AETSGGLL+CLP E A  +  E++     +G  AW+VG V 
Sbjct: 84486 MAKVNEAIGNSFKLLDGFAAETSGGLLLCLPAENADAYIKELREL---DGKPAWVVGRVV 84316

Query: 412   KGNRTARIIDKPRVIEVLP 430
              G++ A I    +VIEV P
Sbjct: 84315 AGSKDAYIAPDSKVIEVTP 84259


>PHYCAscaffold_87
          Length = 182599

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 152    MMGRIACANVLSDLYAMGITEC 173
              M    ACAN+L+D+ A+G++EC
Sbjct: 144540 MCASTACANLLADVEALGLSEC 144475


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,890,092
Number of Sequences: 917
Number of extensions: 374267
Number of successful extensions: 1582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 344
length of query: 452
length of database: 21,341,249
effective HSP length: 108
effective length of query: 344
effective length of database: 21,242,213
effective search space: 7307321272
effective search space used: 7307321272
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)