TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6185  |  | 1 to 5850                                         221   6e-58
Lt_contig2736  |  | 1 to 1634                                          30   4.5  
Lt_contig4301  |  | 1 to 3980                                          29   5.9  
Lt_contig3269  |  | 1 to 702                                           29   5.9  

>Lt_contig6185  |  | 1 to 5850
          Length = 5850

 Score =  221 bits (564), Expect = 6e-58
 Identities = 147/396 (37%), Positives = 195/396 (49%), Gaps = 15/396 (3%)
 Frame = -3

Query: 41   FEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPPLTSXXXXXXXXXX 100
            F+P +LG    ++LT ++ +KG  CK+PQ  LL LL+ L                     
Sbjct: 5650 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLTLLQEL--------------------- 5534

Query: 101  XXXXXSTRPGPGSAFPSLSIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMGR 155
                 S  PG         +G+D  ++PL+        L LV TTDFF+P V DP++ G+
Sbjct: 5533 -----SATPG------QKDVGVDCSIVPLQRTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 5387

Query: 156  IACANVLSDLYAMGITECDNXXXXXXXXXXXXEKEREKVTPLMIKGFRDXXXXXXXXXXX 215
            I  ANVLSDLY+MGI +CD             E ER   T  ++KGF +           
Sbjct: 5386 IGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERAHLATTTVTG 5207

Query: 216  XXXXXNPWIIIGGVATVVCQQNEFIMPDSAV-VGDVLVLTKPLGTQVAANAHQWLDNPEK 274
                 NPW +IGGVA  V  + E + P   +  GD+LVLTKPLG QVA N  QWL  P  
Sbjct: 5206 GQTVMNPWPLIGGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAVNLKQWLLRPSP 5027

Query: 275  W--NKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 332
               + IK  +S EE+E  Y  A  +M  LNR  A LM    AH ATD+TGFGILGH+ N 
Sbjct: 5026 LYEDAIKGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNF 4847

Query: 333  AKQQ-----KNEVSFVIHNLPXXXXXXXXXXXXG-RFGLLQGTSAETSGGLLICLPREQA 386
               Q        +  V+  LP              ++ LL+G S ETSGGLL+  P   A
Sbjct: 4846 GAAQTMGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSPETSGGLLVAFPNTTA 4667

Query: 387  AR-FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 421
            A  FC+E+  ++  +G  +WIVG VE  +R A  +D
Sbjct: 4666 AEAFCAEL--TEVDDGCPSWIVGHVE--DRAASSVD 4571


>Lt_contig2736  |  | 1 to 1634
          Length = 1634

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 247 VGDVLVLTKPLGTQVAANAHQWLDNPEK 274
           VGD  VLT P    V A  HQ +D P +
Sbjct: 428 VGDTCVLTSPTALHVGATVHQMVDWPRR 511


>Lt_contig4301  |  | 1 to 3980
          Length = 3980

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 373 TSGGLLI-CLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDK 422
           T G L + C+PR      C   +  +Y  G Q  I G+V +G R  R +D+
Sbjct: 154 TGGALPVSCVPRLALTLACVSQEPERYAGGKQVEIFGVVVRG*REKRGMDE 2


>Lt_contig3269  |  | 1 to 702
          Length = 702

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 368 GTSAETSGGLLICLPREQAARF-CSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 421
           G  + T+  +L+C    QA+R  C +      G GH AW+   V   +  A  +D
Sbjct: 466 GQRSRTA*SVLMCGAHRQASRLPCVDASRRSAGAGHAAWLAACVGVSSIPAHPLD 630


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,888,033
Number of Sequences: 7267
Number of extensions: 215411
Number of successful extensions: 954
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 622
length of query: 452
length of database: 10,532,946
effective HSP length: 103
effective length of query: 349
effective length of database: 9,784,445
effective search space: 3414771305
effective search space used: 3414771305
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)