TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338243562|gb|AFNH01001384.1| Gregarina niphandrodes asmbl.221...    30   1.7  
gi|338241656|gb|AFNH01002337.1| Gregarina niphandrodes asmbl.308...    28   6.5  
gi|338242377|gb|AFNH01001976.1| Gregarina niphandrodes asmbl.275...    28   6.5  

>gi|338243562|gb|AFNH01001384.1| Gregarina niphandrodes asmbl.2210,
           whole genome shotgun sequence
          Length = 1827

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 43  PQTLGFSPS-WRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPP 87
           PQ   + P+ W   S +GM+      P++TL  L    +RP L PP
Sbjct: 261 PQ*CSYGPTPWLTVSIAGMR*LSTLAPRQTLAPLGPTSSRPTLPPP 398


>gi|338241656|gb|AFNH01002337.1| Gregarina niphandrodes asmbl.3083,
            whole genome shotgun sequence
          Length = 53849

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +1

Query: 39   RPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPP 87
            R   P   G  P  RL   S   G  C+VP+  +    +G  RP   PP
Sbjct: 2425 RARRPADAGARPRGRLRVRSSAAGRRCRVPRSLVSATPQGNPRPRPPPP 2571


>gi|338242377|gb|AFNH01001976.1| Gregarina niphandrodes asmbl.2753,
            whole genome shotgun sequence
          Length = 18440

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 27   AGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSG 59
            +GW + RS S  R      L FS S R TSFSG
Sbjct: 9929 SGWDSLRSSSYSRTATSIILAFSCSMRTTSFSG 9831


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,396,322
Number of Sequences: 3680
Number of extensions: 107510
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 343
length of query: 452
length of database: 5,120,956
effective HSP length: 98
effective length of query: 354
effective length of database: 4,760,316
effective search space: 1685151864
effective search space used: 1685151864
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)