TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...   267   1e-71

>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score =  267 bits (682), Expect = 1e-71
 Identities = 144/297 (48%), Positives = 177/297 (59%), Gaps = 8/297 (2%)
 Frame = +3

Query: 142     FFYPLVEDPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXXXXEKEREKVTPLMIKG 201
               FF+PLV+DPY  G+IACANVLSDLY+ GI +CDN             ++R+  + LMI+G
Sbjct: 5741658 FFFPLVDDPYFQGKIACANVLSDLYSFGIEDCDNMLMLLACSTDMTAEQRQWSSKLMIQG 5741837

Query: 202     FRDXXXXXXXXXXXXXXXXNPWIIIGGVATVVCQQNEFIMPDSAVVGDVLVLTKPLGTQV 261
               F D                NPW I+GGVAT + + NEFI P +AV GDVLVLTKPLGTQV
Sbjct: 5741838 FNDQAICAGSKVSGGQTVKNPWPIVGGVATSILKTNEFIKPVNAVPGDVLVLTKPLGTQV 5742017

Query: 262     AANAHQWLDNPEKWNKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDIT 321
                 N HQWL  PE+W KI  + + EE E  +  A  +MA LNR  A LM  +NAHAATD+T
Sbjct: 5742018 CVNFHQWLSKPERWEKINTITNAEECEQVFNYATLSMARLNRVGARLMKKYNAHAATDVT 5742197

Query: 322     GFGILGHSQNLAKQQKNEVSFVIHNLPXXXXXXXXXXXXGR-FGLLQGTSAETSGGLLIC 380
               GFGILGHS NLA+ Q   + F IH LP               F LL+GTSAETSGGLLI 
Sbjct: 5742198 GFGILGHSTNLAQNQLLPIRFEIHTLPIIKHMKKLEDHLNHPFKLLKGTSAETSGGLLIS 5742377

Query: 381     LPREQAARFCSEIKSSKYGEGHQAWIVGIV-------EKGNRTARIIDKPRVIEVLP 430
               + RE A  FC EI      E   AWI+G V       ++   T+ I++ P++IEV P
Sbjct: 5742378 MSRENAEAFCKEIYEI---EKQPAWIIGDVIDQSSNYDRSKNTSIILENPKIIEVEP 5742539



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +1

Query: 53      RLTSFSGMKGUGCKVPQETLLKLLEGL 79
               RLT F+ +KG GCKVPQ  LL LL+G+
Sbjct: 5741398 RLTDFTKLKG*GCKVPQAELLSLLDGI 5741478


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,855,353
Number of Sequences: 6
Number of extensions: 118707
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 23
length of query: 452
length of database: 11,314,357
effective HSP length: 104
effective length of query: 348
effective length of database: 11,313,733
effective search space: 3937179084
effective search space used: 3937179084
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)