TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig765  |  | 1 to 162644                                        217   1e-56
Cf_Contig969  |  | 1 to 310710                                         29   7.3  
Cf_Contig868  |  | 1 to 148466                                         29   7.3  

>Cf_Contig765  |  | 1 to 162644
          Length = 162644

 Score =  217 bits (553), Expect = 1e-56
 Identities = 147/398 (36%), Positives = 193/398 (48%), Gaps = 15/398 (3%)
 Frame = +3

Query: 41     FEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPALQPPLTSXXXXXXXXXX 100
              F+P +LG    ++LT ++ +KG  CK+PQ  LL LL+ +                     
Sbjct: 101625 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAV--------------------- 101741

Query: 101    XXXXXSTRPGPGSAFPSLSIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMGR 155
                   +T PG         +GMD  ++PL H       L LV TTDFF+P V DP++ G 
Sbjct: 101742 -----ATSPG------QKDVGMDCSIVPLHHTNGKGEALFLVSTTDFFFPSVADPFLQGH 101888

Query: 156    IACANVLSDLYAMGITECDNXXXXXXXXXXXXEKEREKVTPLMIKGFRDXXXXXXXXXXX 215
              I  ANVLSDLY+MGI  CD             E ER   T  +++GF +           
Sbjct: 101889 IGAANVLSDLYSMGIAHCDTMLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVTG 102068

Query: 216    XXXXXNPWIIIGGVATVVCQQNEFIMPDSAV-VGDVLVLTKPLGTQVAANAHQWLDNPEK 274
                   NPW +IGGVA  V  + E + P   +  GDVLVLTKPLG Q+A N  QWL  P  
Sbjct: 102069 GQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAMNLKQWLMRPSP 102248

Query: 275    W--NKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 332
                 + I+  +SR+E+E  Y +A  +M  LNR  A LM    AH ATD+TGFGILGH+ N 
Sbjct: 102249 LYEDVIEGHISRDEIEELYNKATDSMRRLNREGARLMLKHGAHGATDVTGFGILGHANNF 102428

Query: 333    AKQQ-----KNEVSFVIHNLP-XXXXXXXXXXXXGRFGLLQGTSAETSGGLLICL-PREQ 385
                 Q        +  V+  LP              ++ L +G SAETSGGLL+ L  RE 
Sbjct: 102429 GAAQAVGSAPQSLCLVLDRLPMLKTAVAASRLMQDKYRLFEGYSAETSGGLLVALASREA 102608

Query: 386    AARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKP 423
              A  F  E++ +    G  +WIVG VE     AR  D P
Sbjct: 102609 AEAFQKELEEA--DGGCPSWIVGRVE-----ARAADAP 102701


>Cf_Contig969  |  | 1 to 310710
          Length = 310710

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 377   LLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARI 419
             L+ICL  E AAR  ++ K +K    H A +    EK  R+ +I
Sbjct: 63230 LVICLRSEMAARTMTKKKQTKKRTSHDASVEATHEKKGRSRKI 63358


>Cf_Contig868  |  | 1 to 148466
          Length = 148466

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 29    WSAGRSFSNYRPFEPQTLGFSPSWRLTSFS 58
             WS+ RSF+   P  P   G +PS R TS S
Sbjct: 92948 WSSRRSFTPTEPMRPSRRGRAPSCRATSGS 93037


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,748,802
Number of Sequences: 1089
Number of extensions: 239663
Number of successful extensions: 996
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 193
length of query: 452
length of database: 12,349,441
effective HSP length: 105
effective length of query: 347
effective length of database: 12,235,096
effective search space: 4245578312
effective search space used: 4245578312
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)