TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_49                                                      291   1e-78
PHYCAscaffold_5                                                        30   7.3  
PHYCAscaffold_87                                                       30   9.6  
PHYCAscaffold_4                                                        30   9.6  
PHYCAscaffold_1                                                        30   9.6  

>PHYCAscaffold_49
          Length = 508508

 Score =  291 bits (746), Expect = 1e-78
 Identities = 182/453 (40%), Positives = 237/453 (52%), Gaps = 53/453 (11%)
 Frame = -3

Query: 28    LGRSFS---------NYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTR 78
             +GR FS         N   F+P +LGL   + LT FS +KG GCK+PQ  LL  L  L  
Sbjct: 85515 IGREFSTPSEANVVANAAAFDPTSLGLEADFVLTNFSALKGCGCKLPQAKLLGYLDDLAN 85336

Query: 79    PDVRPPLGRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-GLSLVQTT 137
              D++P                         +P       GMDS V+ + HG  L LV TT
Sbjct: 85335 -DLKP-----------------------NETP-------GMDSSVVKISHGTDLYLVSTT 85249

Query: 138   DFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVK 197
             DFF+P VEDPY+ G+IACANVLSD YAMG+TE D                R+ VT  M++
Sbjct: 85248 DFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVDTMLMILGVCRDMSEKQRDVVTTQMIR 85069

Query: 198   GFRDXXXXXXXXXXXXXXXXNPWIIIGGVATVVCQ---------------------PNEF 236
             GF D                NPW I+GGVA  V                        ++ 
Sbjct: 85068 GFNDLARQAHTNVTGGQTVMNPWPIVGGVAMSVRSG**KLSIQHL*LI*D*RVFPAESQI 84889

Query: 237   IMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMA 296
             I P++AVVGDV++LTKPLGTQVAVN  QW   PERW +V+ +V+ E+ ++A+Q A  +M+
Sbjct: 84888 IRPENAVVGDVIILTKPLGTQVAVNLFQWKKKPERWQRVESIVTPEDADVAFQMASESMS 84709

Query: 297   TLNRTAAGLMHT---------------------FNAHAATDITGFGILGHSQNLAKQQRN 335
              LN  AA +MH                      + AH+ATD+TGFGI+ H++N AK Q  
Sbjct: 84708 RLNLNAAKMMHKVR*VFCLLPFITY*LSLSLC*YGAHSATDVTGFGIVAHARNQAKSQLG 84529

Query: 336   EVSFVIHNLPIIAKMAAVSKASGR-FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSK 394
             +VSF IH LPII  MA V++A G  F LL G +AETSGGLL+CLP E A  +  E++   
Sbjct: 84528 DVSFEIHTLPIIKNMAKVNEAIGNSFKLLDGFAAETSGGLLLCLPAENADAYIKELREL- 84352

Query: 395   YGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLP 427
               +G  AW+VG V  G++ A I    +VIEV P
Sbjct: 84351 --DGKPAWVVGRVVAGSKDAYIAPDSKVIEVTP 84259


>PHYCAscaffold_5
          Length = 1593284

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
 Frame = -3

Query: 329    LAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGL-----LQGTSAETSGGLLICLPREQA 383
              L+   RN+   + + LPI   +     ASG FG+     L G        L   + ++  
Sbjct: 896961 LSNDVRNDEDLIPYRLPIEDILIQEELASGGFGVVHLAHLYGQRVVVKQILPKAMSKDLL 896782

Query: 384    ARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAVL 435
               RF  EI+   Y       IV  +  G     ++D   VIE +PRG    +L
Sbjct: 896781 RRFMDEIR--LYARMDHPKIVHFI--GLAWTNLLDLSLVIEYMPRGDLTTLL 896638


>PHYCAscaffold_87
          Length = 182599

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 149    MMGRIACANVLSDLYAMGITEC 170
              M    ACAN+L+D+ A+G++EC
Sbjct: 144540 MCASTACANLLADVEALGLSEC 144475


>PHYCAscaffold_4
          Length = 1587695

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -1

Query: 63      KVPQEALLKLLAGLTRP-----DVRPPLGRGLVGGQEEASQEAGLPAGAGPSPTFP 113
               K+P   LL        P     D+RPP  R LV  QE  S  +GL  G  PS T P
Sbjct: 1427570 KLPDPQLLGTTGPTASPRRPSGDIRPPTLRHLVSLQESPS-NSGLQMGLRPSGTVP 1427406


>PHYCAscaffold_1
          Length = 2170955

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +1

Query: 75     GLTRPDVRPPLGRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGGL 131
              G +   VRP + RG  G   +   E+GL  G  P P  P LG G+     P   GG+
Sbjct: 578743 GSSSLSVRPVICRGRGGRTGDPRSESGLGGGVSPRPD-PGLGGGVSPWPDPGLGGGV 578910


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,012,777
Number of Sequences: 917
Number of extensions: 423151
Number of successful extensions: 1960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 839
length of query: 448
length of database: 21,341,249
effective HSP length: 108
effective length of query: 340
effective length of database: 21,242,213
effective search space: 7222352420
effective search space used: 7222352420
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)