TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete (448 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig6185 | | 1 to 5850 224 9e-59 Lt_contig1419 | | 1 to 4776 31 1.5 Lt_contig2736 | | 1 to 1634 29 5.8 Lt_contig1493 | | 1 to 6335 29 5.8 Lt_contig4301 | | 1 to 3980 29 5.8 Lt_contig3269 | | 1 to 702 29 5.8 Lt_contig3880 | | 1 to 6624 29 7.6 Lt_contig5631 | | 1 to 1682 28 9.9 Lt_contig6512 | | 1 to 4853 28 9.9 >Lt_contig6185 | | 1 to 5850 Length = 5850 Score = 224 bits (571), Expect = 9e-59 Identities = 148/396 (37%), Positives = 201/396 (50%), Gaps = 15/396 (3%) Frame = -3 Query: 38 FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97 F+P +LGL ++LT ++ +KG CK+PQ LL LL L+ GQ++ Sbjct: 5650 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLTLLQELSATP-----------GQKD-- 5510 Query: 98 QEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMGR 152 +G+D ++PL+ L LV TTDFF+P V DP++ G+ Sbjct: 5509 -------------------VGVDCSIVPLQRTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 5387 Query: 153 IACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXXX 212 I ANVLSDLY+MGI +CD R T ++KGF + Sbjct: 5386 IGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERAHLATTTVTG 5207 Query: 213 XXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWL--DNP 269 NPW +IGGVA V E + P + GD+LVLTKPLG QVAVN QWL +P Sbjct: 5206 GQTVMNPWPLIGGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAVNLKQWLLRPSP 5027 Query: 270 ERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 329 + +K +S EE+E Y A +M LNR A LM AH ATD+TGFGILGH+ N Sbjct: 5026 LYEDAIKGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNF 4847 Query: 330 AKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICLPREQA 383 Q + V+ LP+ A SK + ++ LL+G S ETSGGLL+ P A Sbjct: 4846 GAAQTMGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSPETSGGLLVAFPNTTA 4667 Query: 384 AR-FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 418 A FC+E+ ++ +G +WIVG VE +R A +D Sbjct: 4666 AEAFCAEL--TEVDDGCPSWIVGHVE--DRAASSVD 4571 >Lt_contig1419 | | 1 to 4776 Length = 4776 Score = 31.2 bits (69), Expect = 1.5 Identities = 27/100 (27%), Positives = 44/100 (44%) Frame = +1 Query: 337 VSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYG 396 VS ++H AAV + R + +GT + T L L R A++ S +S Sbjct: 3640 VSCMVHRSTDSIPAAAVESSHARNPVEEGTDSPTDAALPQYLSRASASKPSSSSLASA-- 3813 Query: 397 EGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAVLA 436 A +G + +G+ A I + +EV+ A AA+ A Sbjct: 3814 ---DAAALGTLPRGDNVAAIRPNTKTLEVVFTSAAAALRA 3924 >Lt_contig2736 | | 1 to 1634 Length = 1634 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +2 Query: 244 VGDVLVLTKPLGTQVAVNAHQWLDNPER 271 VGD VLT P V HQ +D P R Sbjct: 428 VGDTCVLTSPTALHVGATVHQMVDWPRR 511 >Lt_contig1493 | | 1 to 6335 Length = 6335 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = +1 Query: 111 TFPALGIG---MDSCVIPLRHGGLSLVQTTDFFYPLVED 146 +FPA+ + C +RH G SL+ FYP+V D Sbjct: 2944 SFPAVAVDPCFQHLCAERVRHSGASLISEATVFYPVVGD 3060 >Lt_contig4301 | | 1 to 3980 Length = 3980 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = -2 Query: 370 TSGGLLI-CLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDK 419 T G L + C+PR C + +Y G Q I G+V +G R R +D+ Sbjct: 154 TGGALPVSCVPRLALTLACVSQEPERYAGGKQVEIFGVVVRG*REKRGMDE 2 >Lt_contig3269 | | 1 to 702 Length = 702 Score = 29.3 bits (64), Expect = 5.8 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = +1 Query: 365 GTSAETSGGLLICLPREQAARF-CSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 418 G + T+ +L+C QA+R C + G GH AW+ V + A +D Sbjct: 466 GQRSRTA*SVLMCGAHRQASRLPCVDASRRSAGAGHAAWLAACVGVSSIPAHPLD 630 >Lt_contig3880 | | 1 to 6624 Length = 6624 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +3 Query: 332 QQRNEVSFVIHNLPIIAKMAAVSKA--SGRFGLLQGTSAETSGGLLICLPREQA 383 + R+ S +P+ K+ + +K SGR +L GT++++S C+P+ +A Sbjct: 2754 RSRSSTSTTWQKIPLSWKITSATKLPLSGRTAVLYGTASKSSSLCASCMPQRRA 2915 >Lt_contig5631 | | 1 to 1682 Length = 1682 Score = 28.5 bits (62), Expect = 9.9 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +3 Query: 116 GIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANV 158 G+G+ + PL H L+L+ FF V +M G +CA V Sbjct: 360 GMGLGLPLSPLSHPSLTLLILRFFFVSAVRQAHMCGAQSCAAV 488 >Lt_contig6512 | | 1 to 4853 Length = 4853 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 358 GRFGLLQGTSAETSGGLLICLPREQAARFCS 388 GR G L S +S +C P+E AR CS Sbjct: 2978 GRLGYLSNASFSSSVWSSLCRPKETCARLCS 3070 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,831,274 Number of Sequences: 7267 Number of extensions: 260136 Number of successful extensions: 1425 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 794 Number of HSP's successfully gapped in prelim test: 95 Number of HSP's that attempted gapping in prelim test: 584 Number of HSP's gapped (non-prelim): 978 length of query: 448 length of database: 10,532,946 effective HSP length: 103 effective length of query: 345 effective length of database: 9,784,445 effective search space: 3375633525 effective search space used: 3375633525 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)