TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_36                                                             226   3e-59
contig_12                                                              31   1.7  
contig_26                                                              30   4.9  
contig_15                                                              29   6.4  

>contig_36
          Length = 2713248

 Score =  226 bits (576), Expect = 3e-59
 Identities = 150/396 (37%), Positives = 198/396 (50%), Gaps = 15/396 (3%)
 Frame = -1

Query: 38      FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97
               F+P +LGL   ++LT ++ +KG  CK+PQ  LL LL  L+              GQ++  
Sbjct: 2120613 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSTTP-----------GQKD-- 2120473

Query: 98      QEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMGR 152
                                  +GMD  ++PL H       L LV TTDFF+P V DP++ G+
Sbjct: 2120472 -------------------VGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 2120350

Query: 153     IACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXXX 212
               I  ANVLSDLY+MGI +CD                R   T  ++KGF +           
Sbjct: 2120349 IGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTG 2120170

Query: 213     XXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPER 271
                    NPW +IGGVA  V    E + P   +  GD+LVLTKPLG QVAVN  QWL  P  
Sbjct: 2120169 GQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSP 2119990

Query: 272     WNKVKMV--VSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 329
                 +  +   +S EE+E  Y  A  +M  LNR  A LM    AH ATD+TGFGILGH+ N 
Sbjct: 2119989 LYEEAIAGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNF 2119810

Query: 330     AKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICLPREQA 383
                  Q        +  V+  LP+     A SK  + ++ LL+G SAETSGGLL+  P   A
Sbjct: 2119809 GAAQTVGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTTA 2119630

Query: 384     AR-FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 418
               A  FC+E+  +    G  +WIVG VE  +R A + D
Sbjct: 2119629 AEAFCAEL--TAIDGGCPSWIVGHVE--DRAANVAD 2119534


>contig_12
          Length = 569561

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +2

Query: 337    VSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYG 396
              ++ V H LP+       S    R  L    +A+        LPR   A F        Y 
Sbjct: 105878 LTLVPHKLPLTVLPLTKSAQPQRSPLAAAAAADPFS----LLPRVSPAPFLLSCTLLTYR 106045

Query: 397    EGHQAWI--VGIVEKGNRTARIIDKPRV 422
                + +W+  VGI E+G RT   + +P +
Sbjct: 106046 AAYSSWLLSVGISERGRRTRAYVGEPEI 106129


>contig_26
          Length = 1058259

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 338    SFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIK-SSKYG 396
              SF++H+LP    + +     G  GL Q  +   S GLL CL   + + +C+ +   S  G
Sbjct: 841594 SFLLHSLPFSLFVVSRLLPRGGRGLFQKETVFFSLGLLHCLLASRVSGWCASLSLISSLG 841773

Query: 397    EGH 399
              + H
Sbjct: 841774 DEH 841782


>contig_15
          Length = 618357

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 244    VGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVK 276
              VGD  VLT P    V    HQ +D P R + ++
Sbjct: 287668 VGDTCVLTSPAALPVGATVHQMVDWPRRMDHMQ 287766


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,507,288
Number of Sequences: 36
Number of extensions: 281123
Number of successful extensions: 1697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1623
Number of HSP's gapped (non-prelim): 266
length of query: 448
length of database: 10,814,999
effective HSP length: 104
effective length of query: 344
effective length of database: 10,811,255
effective search space: 3719071720
effective search space used: 3719071720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)