TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete (448 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 231 8e-66 gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ... 29 6.2 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 231 bits (590), Expect(2) = 8e-66 Identities = 135/320 (42%), Positives = 177/320 (55%), Gaps = 31/320 (9%) Frame = -2 Query: 139 FFYPLVEDPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKG 198 FF+P +DPY+MG+IACANVLSDLY+ GI +CDN R T M+ G Sbjct: 338566 FFFPNCDDPYLMGKIACANVLSDLYSFGIADCDNMLMILAGSTDMTPEQRTWSTRGMING 338387 Query: 199 FR------------------------DXXXXXXXXXXXXXXXXNPWIIIGGVATVVCQPN 234 F D NPW IIGGVAT V + + Sbjct: 338386 FNGIYLHQR**FFLLFINLFYFFYSLDNAKIAGTNITGGQTVKNPWPIIGGVATSVVKKD 338207 Query: 235 EFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDN-PERWNKVKMVVSREEVELAYQEAMF 293 EFIMP AV GDVLVLTKPLGTQV NAHQWL PE+W ++ VV+RE++ + A+ Sbjct: 338206 EFIMPVGAVAGDVLVLTKPLGTQVCANAHQWLQGFPEKWERITGVVTREQIIECWAYAVN 338027 Query: 294 NMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAV 353 +MA LNRT A +M AHA TD+TGFG+LGHS NLAK Q V F I LPI+ M + Sbjct: 338026 SMARLNRTGARMMMKHGAHACTDVTGFGLLGHSMNLAKNQNAAVYFEIDTLPIMQGMVEI 337847 Query: 354 -SKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNR 412 + + + LL+G SAETSGGLL+ LP ++A F +++ + AWI+G V+ ++ Sbjct: 337846 DATLNYNYNLLKGMSAETSGGLLVALPADKAQAFIDDMQEI---DKQPAWIIGKVKASDK 337676 Query: 413 T-----ARIIDKPRVIEVLP 427 + ++D +I VLP Sbjct: 337675 PQSENYSYLVDNLNIINVLP 337616 Score = 38.1 bits (87), Expect(2) = 8e-66 Identities = 25/89 (28%), Positives = 35/89 (39%) Frame = -1 Query: 50 RLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGLPAGAGPS 109 +LT F+ +KG GCK+PQ+ LL LL G+ Sbjct: 338813 KLTDFTKLKG*GCKIPQKELLSLLEGI--------------------------------- 338733 Query: 110 PTFPALGIGMDSCVIPLRHGGLSLVQTTD 138 GIG D V+P + + +V TTD Sbjct: 338732 ----GSGIGFDCSVVPTKFNDIVMVSTTD 338658 >gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun sequence Length = 1770755 Score = 29.3 bits (64), Expect = 6.2 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = -3 Query: 86 GRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPL 126 G+ +GG+ + +G G GP+P P G D C L Sbjct: 562281 GKPGIGGKSSSDSPSGGSTGGGPTPPPPPKGPSKDGCKFKL 562159 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,707,135 Number of Sequences: 25 Number of extensions: 145057 Number of successful extensions: 469 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 436 Number of HSP's gapped (non-prelim): 93 length of query: 448 length of database: 10,339,736 effective HSP length: 103 effective length of query: 345 effective length of database: 10,337,161 effective search space: 3566320545 effective search space used: 3566320545 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)