TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete (448 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig765 | | 1 to 162644 218 8e-57 Cf_Contig741 | | 1 to 201246 30 4.3 Cf_Contig1035 | | 1 to 245267 30 5.6 Cf_Contig969 | | 1 to 310710 29 7.3 Cf_Contig905 | | 1 to 92649 29 7.3 Cf_Contig1050 | | 1 to 279392 29 9.5 >Cf_Contig765 | | 1 to 162644 Length = 162644 Score = 218 bits (555), Expect = 8e-57 Identities = 148/399 (37%), Positives = 198/399 (49%), Gaps = 16/399 (4%) Frame = +3 Query: 38 FEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGL-TRPDVRPPLGRGLVGGQEEA 96 F+P +LGL ++LT ++ +KG CK+PQ LL LL + T P GQ++ Sbjct: 101625 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAVATSP------------GQKD- 101765 Query: 97 SQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMG 151 +GMD ++PL H L LV TTDFF+P V DP++ G Sbjct: 101766 --------------------VGMDCSIVPLHHTNGKGEALFLVSTTDFFFPSVADPFLQG 101885 Query: 152 RIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXX 211 I ANVLSDLY+MGI CD R T +++GF + Sbjct: 101886 HIGAANVLSDLYSMGIAHCDTMLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVT 102065 Query: 212 XXXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPE 270 NPW +IGGVA V E + P + GDVLVLTKPLG Q+A+N QWL P Sbjct: 102066 GGQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAMNLKQWLMRPS 102245 Query: 271 RW--NKVKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQN 328 + ++ +SR+E+E Y +A +M LNR A LM AH ATD+TGFGILGH+ N Sbjct: 102246 PLYEDVIEGHISRDEIEELYNKATDSMRRLNREGARLMLKHGAHGATDVTGFGILGHANN 102425 Query: 329 LAKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICL-PRE 381 Q + V+ LP++ A S+ ++ L +G SAETSGGLL+ L RE Sbjct: 102426 FGAAQAVGSAPQSLCLVLDRLPMLKTAVAASRLMQDKYRLFEGYSAETSGGLLVALASRE 102605 Query: 382 QAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKP 420 A F E++ + G +WIVG VE AR D P Sbjct: 102606 AAEAFQKELEEA--DGGCPSWIVGRVE-----ARAADAP 102701 >Cf_Contig741 | | 1 to 201246 Length = 201246 Score = 30.0 bits (66), Expect = 4.3 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Frame = -3 Query: 46 SPSWRLTGFSGMKGUGC---KVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGL 102 SP W+L F+G G GC +P+ + G P GL G Q E G+ Sbjct: 22771 SPCWKLRRFAGTCGPGCWPGSLPRGGIPSQQGG--------PCPTGLPGWQSEVLSPCGV 22616 Query: 103 PAGAGPSPTFPALGIG 118 G SP L +G Sbjct: 22615 R*GL*SSPGCAPLRLG 22568 >Cf_Contig1035 | | 1 to 245267 Length = 245267 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +2 Query: 83 PPLGRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIP 125 P RGL+ G++ S EAGL G +PT A + C P Sbjct: 179012 PSPARGLLVGRQCRSDEAGLLRGRAATPTTTASAVASHRCGRP 179140 Score = 29.3 bits (64), Expect = 7.3 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Frame = +2 Query: 45 LSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVG-GQEEASQEAGLP 103 L+PS G GC+ P+ + A T P + RGL G S Sbjct: 213581 LTPSGPARRSGGGWRRGCRAPRAPAVAAAAAGTTPSIAAARRRGLRGAAHSRRSARPPAA 213760 Query: 104 AGAGPSPTFPALGIGMDSC 122 GAG S PAL C Sbjct: 213761 VGAGCSACSPALAAAPRRC 213817 >Cf_Contig969 | | 1 to 310710 Length = 310710 Score = 29.3 bits (64), Expect = 7.3 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 374 LLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARI 416 L+ICL E AAR ++ K +K H A + EK R+ +I Sbjct: 63230 LVICLRSEMAARTMTKKKQTKKRTSHDASVEATHEKKGRSRKI 63358 >Cf_Contig905 | | 1 to 92649 Length = 92649 Score = 29.3 bits (64), Expect = 7.3 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +1 Query: 100 AGLPAGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLV 144 AG P+ AG SP+ G G+D + L + + DFF P V Sbjct: 72559 AGTPSAAGASPSPAQEGNGLDGASVDLVYSYEESPHSYDFFGPFV 72693 >Cf_Contig1050 | | 1 to 279392 Length = 279392 Score = 28.9 bits (63), Expect = 9.5 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = -2 Query: 79 PDVRPPLGRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGGLSL 133 P PP+GRG G+ A + PA A S A+G G P R GG ++ Sbjct: 193624 PRTNPPVGRG-AAGKPLAGHRSAAPAHAAASTAACAVGTG---TAPPRREGGKAM 193472 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,784,205 Number of Sequences: 1089 Number of extensions: 288084 Number of successful extensions: 1628 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 64 Number of HSP's that attempted gapping in prelim test: 1325 Number of HSP's gapped (non-prelim): 700 length of query: 448 length of database: 12,349,441 effective HSP length: 104 effective length of query: 344 effective length of database: 12,236,185 effective search space: 4209247640 effective search space used: 4209247640 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)