TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848434|gb|ADNL01002169.1| Astrammina rara contig02594, who...    25   3.7  
gi|330847724|gb|ADNL01002879.1| Astrammina rara contig01283, who...    24   6.3  

>gi|330848434|gb|ADNL01002169.1| Astrammina rara contig02594, whole
            genome shotgun sequence
          Length = 2535

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 327  QNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGR 359
            Q +   Q    SF+  N+P+ A + A+S  SGR
Sbjct: 2256 QRVVTDQNTNDSFLCCNIPLFACVEALSIKSGR 2354


>gi|330847724|gb|ADNL01002879.1| Astrammina rara contig01283, whole
           genome shotgun sequence
          Length = 704

 Score = 23.9 bits (50), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 62  CKVPQEALLKLLAGLTRPDVRP 83
           CKV    L+K  A  +RP +RP
Sbjct: 247 CKVCLTVLIKATAAPSRPSIRP 182


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,936
Number of Sequences: 3231
Number of extensions: 7194
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 448
length of database: 483,365
effective HSP length: 77
effective length of query: 371
effective length of database: 234,578
effective search space: 87028438
effective search space used: 87028438
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)