TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                   234   7e-62

>TcIL3000_10_v2.embl
          Length = 3612457

 Score =  234 bits (596), Expect = 7e-62
 Identities = 144/376 (38%), Positives = 215/376 (57%), Gaps = 9/376 (2%)
 Frame = +1

Query: 2       FQPEKHGLEPDFQLTKFTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGMDCAVI 61
               F+P + GL  +F LT +    G SCK+PQ  L   L+         D     +GMDC+++
Sbjct: 2071891 FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALLQRVSATPGQKD-----AGMDCSIV 2072055

Query: 62      PLKRHKD-----YLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVS 116
                L+ HKD       ++ T DFF+P V DP L G+I  ANVLSD+Y+ G+ + DTV M+++
Sbjct: 2072056 KLQ-HKDESGNQLYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLA 2072232

Query: 117     TSTSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEE 176
                ST   + ERD+    +MKGF + ++  G   T     Q  +NPW +IGGIA SV    +
Sbjct: 2072233 ASTDMDKTERDICTREMMKGFVDHVRLAGSDVTG---GQTVMNPWPLIGGIAMSVVPESQ 2072403

Query: 177     IILPSNAQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDAD-IKETFEIAVK 235
               ++ P+  +PGD+LVLTKPLG Q+A++   W    +  Y+  +    D + I E +  A +
Sbjct: 2072404 MVRPTGLRPGDILVLTKPLGCQIAVNLKQWIHRPSPIYESRIQGKMDLEEIDELYCAAAE 2072583

Query: 236     SMTYLNKNAALLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKF 295
                M  LN+ AA LM  ++AH ATD+TGFG++GHA NL   Q+ K+   +N LP+ K  +K 
Sbjct: 2072584 GMKRLNREAARLMCVHKAHGATDVTGFGIIGHATNLGGAQEAKLCLVLNSLPMYKGAVKA 2072763

Query: 296     STLVGQSTKFRSGRSVETSGGLLICL-PADAADKFCRDFEEATNGEQKSFQIGH-VTAAN 353
               S L+    +   G S ETSGGLL+       A+++ RD  +A    + ++ +G  VT A+
Sbjct: 2072764 SRLMDDKFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLRDADG--EPAWVVGRVVTRAD 2072937

Query: 354     ESD-AVLCEDVEFIEV 368
               +S  AVL +D + IEV
Sbjct: 2072938 DSPAAVLEKDYKIIEV 2072985



 Score = 29.3 bits (64), Expect = 3.5
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = -1

Query: 294     KFSTLVGQSTKFRSGRSVETSG-----GLLICLPADAADKFCRDFEEATNGEQKSFQIGH 348
               +  TLV QS ++   R +  S      GLLI    +A     R + +    E KSF++ H
Sbjct: 1793995 RLRTLVHQSMQYALDRLISLSHLLEGPGLLILDACNARPDTRRRWRQLLPNELKSFRLVH 1793816

Query: 349     VTAANES 355
               +T A++S
Sbjct: 1793815 LTCADKS 1793795


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,545,729
Number of Sequences: 11
Number of extensions: 118046
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 41
length of query: 370
length of database: 7,429,315
effective HSP length: 99
effective length of query: 271
effective length of database: 7,428,226
effective search space: 2013049246
effective search space used: 2013049246
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)