TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.328...    32   0.45 
gi|338243436|gb|AFNH01001447.1| Gregarina niphandrodes asmbl.226...    28   3.8  

>gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.3288,
            whole genome shotgun sequence
          Length = 45373

 Score = 31.6 bits (70), Expect = 0.45
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = -3

Query: 144  NGYRNTPLIIRQLKINPWCIIGGIATSVCRSEEIILPSNAQPGDVLVLTKPLGGQMAMDA 203
            NG  + PL+++QL+  P C++  + +S+C    + +   +  G+VL+    + G +++ +
Sbjct: 2474 NGRLSLPLLVQQLR--PTCLLDSLLSSLCPK*RVFVQKYSCRGNVLIYRGSVSG-LSVWS 2304

Query: 204  HLWQLN 209
              W  N
Sbjct: 2303 SAWYFN 2286


>gi|338243436|gb|AFNH01001447.1| Gregarina niphandrodes asmbl.2268,
            whole genome shotgun sequence
          Length = 9392

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 172  CRSEEIILPSNAQPGDVLVLTKPLGGQMAMDAHL 205
            CR+  I  P + +P   LVLTKPL   +A+  +L
Sbjct: 4074 CRALPITSPCSPRPPTSLVLTKPLPSNLALPFNL 4175


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,952,668
Number of Sequences: 3680
Number of extensions: 82707
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 267
length of query: 370
length of database: 5,120,956
effective HSP length: 96
effective length of query: 274
effective length of database: 4,767,676
effective search space: 1306343224
effective search space used: 1306343224
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)