TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850524|gb|ADNL01000079.1| Astrammina rara contig00082, who...    27   0.47 
gi|330850357|gb|ADNL01000246.1| Astrammina rara contig00257, who...    25   3.0  
gi|330849608|gb|ADNL01000995.1| Astrammina rara contig01161, who...    24   5.2  
gi|330850437|gb|ADNL01000166.1| Astrammina rara contig00173, who...    23   6.7  

>gi|330850524|gb|ADNL01000079.1| Astrammina rara contig00082, whole
            genome shotgun sequence
          Length = 9033

 Score = 27.3 bits (59), Expect = 0.47
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 259  ITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLVGQSTKFR 306
            ++ F  LGHAN++      +V    + +  I+ V+     +  STKFR
Sbjct: 6140 VSRFSFLGHANSIGVHTHFEVKISFSLVSHIRAVISAHHTIPTSTKFR 6283


>gi|330850357|gb|ADNL01000246.1| Astrammina rara contig00257, whole
           genome shotgun sequence
          Length = 548

 Score = 24.6 bits (52), Expect = 3.0
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 72  IQTVDFFYPMVNDPELLG-RIAL 93
           I T  F+ P++ +PELLG ++AL
Sbjct: 368 IST*HFYVPLIKNPELLGFKVAL 436


>gi|330849608|gb|ADNL01000995.1| Astrammina rara contig01161, whole
           genome shotgun sequence
          Length = 348

 Score = 23.9 bits (50), Expect = 5.2
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
 Frame = -1

Query: 118 STSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLI----------IRQLKINPWCIIGGI 167
           + +FS+    +V+ L  + F   LKA  +R  PLI          I  LK N +  +   
Sbjct: 309 AVAFSKIPSVLVVVLKFQEFSG*LKAVVFRKIPLISVTLLTSQEFIFWLKANAYPNVLNK 130

Query: 168 ATSVCRSEEIILPSNA 183
             ++  S+E+I P  A
Sbjct: 129 LVTLLTSQELIFPLKA 82


>gi|330850437|gb|ADNL01000166.1| Astrammina rara contig00173, whole
           genome shotgun sequence
          Length = 308

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 304 KFRSGRSVETSGGLLICLPADAADKFCRD 332
           +FR GR V  S     C P  ++   CRD
Sbjct: 243 RFRRGRGV*VSPHRTSCHPCSSSRSSCRD 157


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,566
Number of Sequences: 3231
Number of extensions: 6620
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of query: 370
length of database: 483,365
effective HSP length: 75
effective length of query: 295
effective length of database: 241,040
effective search space: 71106800
effective search space used: 71106800
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)