TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.927 of Sphaeroforma arctica JP610                           72   3e-12
supercont1.404 of Sphaeroforma arctica JP610                           30   7.8  

>supercont1.927 of Sphaeroforma arctica JP610
          Length = 30644

 Score = 71.6 bits (174), Expect = 3e-12
 Identities = 35/87 (40%), Positives = 50/87 (57%)
 Frame = +2

Query: 156  GSIAENPWCVIGGAASAVCHRSELIMPYNAQPGDALVLTKPLGTQLATNAYIWMGEQQSD 215
            G    NPW ++GG A +V   +++I P NA+ GD +VLTKPLGTQLA N + W+   Q  
Sbjct: 3893 GQSVMNPWPILGGVAQSVMLATDVITPENARAGDVMVLTKPLGTQLAVNLHQWL--DQPK 4066

Query: 216  SWAQLRERFTVADIEQTYRIALESMSR 242
             W Q++       + + Y +A  SM R
Sbjct: 4067 WWDQVKHVIDAETVIRAYNVASASMKR 4147



 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 30/56 (53%), Positives = 38/56 (67%)
 Frame = +1

Query: 235  IALESMSRLNKTGAELMKKYGAHAATDVTGFGLYGHAENLASHQTADVDFHLDTLP 290
            I  + + RLN  GA+LM K+ A AATDVTGFG+ GHA NLA  Q A +   +D+LP
Sbjct: 4570 IYCQYLLRLNMVGAQLMHKHNARAATDVTGFGILGHANNLAQAQKAKLTLRIDSLP 4737



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 24/47 (51%), Positives = 38/47 (80%)
 Frame = +3

Query: 76   LVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLIVTA 122
            +V + DFFYPL+DDP+  G+IA ANV+SD++AVGA ++D + +I+ +
Sbjct: 2595 MVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMILAS 2735



 Score = 37.0 bits (84), Expect = 0.083
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query: 279  TADVDFHLDTLPIIKNVREIAETLGRGA--KLLAGKAVETSGGLLICLPREAAAGFCEEY 336
            T  VD     + +IK    +   L  GA   L  G + ETSGGLL+C+    A  FC   
Sbjct: 6039 TTSVDSVYYPISVIKGTIAVDRVLKGGALFNLATGYSAETSGGLLMCMAPADADAFCRAI 6218

Query: 337  RRCTKHEAWIVG 348
                  +A++VG
Sbjct: 6219 HAEEGWKAFVVG 6254



 Score = 30.4 bits (67), Expect = 7.8
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 4    PESYGLSHDFRLTKFSTLRG 23
            P  YGL  DFRLT +STL+G
Sbjct: 1524 PTVYGLPTDFRLTDYSTLKG 1583


>supercont1.404 of Sphaeroforma arctica JP610
          Length = 77350

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 267   LYGHAENLASHQTADVDFHLDTLPIIKNVREIAETLGR 304
             +YG  +   +H    V++HL   PI+ +++E  E +GR
Sbjct: 16112 VYGCVQRCRAHDIQTVEWHLAVEPIMVHIKESLEAIGR 15999


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,833,158
Number of Sequences: 15618
Number of extensions: 642920
Number of successful extensions: 2148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1428
Number of HSP's gapped (non-prelim): 1021
length of query: 369
length of database: 40,529,447
effective HSP length: 111
effective length of query: 258
effective length of database: 38,795,849
effective search space: 10009329042
effective search space used: 10009329042
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)