TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6185  |  | 1 to 5850                                         233   2e-61
Lt_contig10  |  | 1 to 24506                                           30   3.5  

>Lt_contig6185  |  | 1 to 5850
          Length = 5850

 Score =  233 bits (593), Expect = 2e-61
 Identities = 140/367 (38%), Positives = 199/367 (54%), Gaps = 14/367 (3%)
 Frame = -3

Query: 2    FKPESYGLSHDFRLTKFSTLRGUGSKVPQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGI 61
            F P S GL  +F+LT ++ L+G   K+PQ  L  LL  +     G KD           +
Sbjct: 5650 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLTLLQELSATP-GQKD-----------V 5507

Query: 62   GLDSSVIALKHD------LFLVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQ 115
            G+D S++ L+        LFLV + DFF+P + DPF+ G+I  ANV+SD++++G  + D 
Sbjct: 5506 GVDCSIVPLQRTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDT 5327

Query: 116  IKLIVTAPTEFTEQEREVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCH 175
            + +++ A TE  E ER +    +M+GF E A      V  G    NPW +IGG A AV  
Sbjct: 5326 MLMLLAASTEMDEHERLITTREIMKGFAERAHLATTTVTGGQTVMNPWPLIGGVAMAVVS 5147

Query: 176  RSELIMPYN-AQPGDALVLTKPLGTQLATNAYIWMGEQQSDSWAQLRERFTVADIEQTYR 234
             +E++ P    + GD LVLTKPLG Q+A N   W+          ++   +  +IE+ Y 
Sbjct: 5146 EAEMVRPTGLLRTGDILVLTKPLGCQVAVNLKQWLLRPSPLYEDAIKGHISPEEIEELYN 4967

Query: 235  IALESMSRLNKTGAELMKKYGAHAATDVTGFGLYGHAENLASHQT-----ADVDFHLDTL 289
            +A +SM RLN+ GA LM+K+GAH ATDVTGFG+ GHA N  + QT       +   L+ L
Sbjct: 4966 MATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQTMGDAPRSLCLVLERL 4787

Query: 290  PIIKNVREIAETLGRGAKLLAGKAVETSGGLLICLPREAAA-GFCEEYRRCTKH-EAWIV 347
            P+ K     ++ +    +LL G + ETSGGLL+  P   AA  FC E         +WIV
Sbjct: 4786 PMFKTAVAASKRMNDKYRLLEGYSPETSGGLLVAFPNTTAAEAFCAELTEVDDGCPSWIV 4607

Query: 348  GHVEKGA 354
            GHVE  A
Sbjct: 4606 GHVEDRA 4586


>Lt_contig10  |  | 1 to 24506
          Length = 24506

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 26/83 (31%), Positives = 36/83 (43%)
 Frame = -2

Query: 218  AQLRERFTVADIEQTYRIALESMSRLNKTGAELMKKYGAHAATDVTGFGLYGHAENLASH 277
            A   ER+ +  +    RIALE++ RL +    L +   A AAT  TG  L    +  A  
Sbjct: 8806 AGFTERYVLDTLRLMPRIALEALERLLR---PLARHSSAAAATSPTG-SLIAAVQRTAVL 8639

Query: 278  QTADVDFHLDTLPIIKNVREIAE 300
                VDF  D + +I   R   E
Sbjct: 8638 SGWSVDFFHDRVSVILQYRRAEE 8570


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,217,239
Number of Sequences: 7267
Number of extensions: 205045
Number of successful extensions: 1204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 980
length of query: 369
length of database: 10,532,946
effective HSP length: 101
effective length of query: 268
effective length of database: 9,798,979
effective search space: 2626126372
effective search space used: 2626126372
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)