TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338243436|gb|AFNH01001447.1| Gregarina niphandrodes asmbl.226...    29   2.2  
gi|338239816|gb|AFNH01003258.1| Gregarina niphandrodes asmbl.616...    28   5.0  
gi|338241626|gb|AFNH01002352.1| Gregarina niphandrodes asmbl.309...    28   5.0  
gi|338240592|gb|AFNH01002870.1| Gregarina niphandrodes asmbl.358...    28   6.5  
gi|338241510|gb|AFNH01002410.1| Gregarina niphandrodes asmbl.315...    27   8.5  

>gi|338243436|gb|AFNH01001447.1| Gregarina niphandrodes asmbl.2268,
            whole genome shotgun sequence
          Length = 9392

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +3

Query: 146  AKACNAPVQIGSIAENPWCVIGG-----AASAVCHRSELIMPYNAQPGDALVLTKPLGTQ 200
            A++C+  V+    + +  C I       A S  C    +  P + +P  +LVLTKPL + 
Sbjct: 3975 ARSCSPAVRSRRHSRSGCCRISSVSGPTARSGRCRALPITSPCSPRPPTSLVLTKPLPSN 4154

Query: 201  LA 202
            LA
Sbjct: 4155 LA 4160


>gi|338239816|gb|AFNH01003258.1| Gregarina niphandrodes asmbl.616,
            whole genome shotgun sequence
          Length = 5181

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 207  IWMGEQQSDSWAQLRERFTVADIEQT 232
            IWM    S SW  LR+ F V  +EQ+
Sbjct: 2585 IWMSGWHSGSWPSLRQAFRVMVLEQS 2662


>gi|338241626|gb|AFNH01002352.1| Gregarina niphandrodes asmbl.3098,
            whole genome shotgun sequence
          Length = 20803

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 326  REAAAGFCEEYRRCTKHEAWIVGHV 350
            RE      E + +CT+H++ IVGH+
Sbjct: 1048 REGEKNILETWAKCTRHQSVIVGHL 974


>gi|338240592|gb|AFNH01002870.1| Gregarina niphandrodes asmbl.3580,
            whole genome shotgun sequence
          Length = 14832

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 303  GRGAKLLAGKAVETSGGLLICLPREA--AAGFCEEYRRCTKHEAWIVGHVEKG 353
            GRG +   G+ ++ SGG+L C P  +  AA F E +        W+V  VEKG
Sbjct: 5823 GRGLQ*SGGRGLQ*SGGMLACAPTSSRGAAHFVE*W----MWNVWMV--VEKG 5683


>gi|338241510|gb|AFNH01002410.1| Gregarina niphandrodes asmbl.3153,
           whole genome shotgun sequence
          Length = 5223

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 309 LAGKAVETSGGLLICLPREAAAGFCEEYRRCT 340
           L G +V TSGG  +   R   +G     RRCT
Sbjct: 430 LTGSSVSTSGGWSVSCSRSRVSGGVTPCRRCT 525


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,324,921
Number of Sequences: 3680
Number of extensions: 94375
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 429
length of query: 369
length of database: 5,120,956
effective HSP length: 96
effective length of query: 273
effective length of database: 4,767,676
effective search space: 1301575548
effective search space used: 1301575548
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)