TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_21                                                           207   3e-53

>scaffold_21
          Length = 951085

 Score =  207 bits (526), Expect = 3e-53
 Identities = 120/354 (33%), Positives = 185/354 (52%), Gaps = 31/354 (8%)
 Frame = -2

Query: 32     VLNRLLAGVYGEQLGDKDGKGPNKEEGVGIGLDSSVIALKHDLFLVQSVDFFYPLIDDPF 91
              + ++L   + G  LG  DG+         I LD S+   +   +++ + DFF+PL+D P+
Sbjct: 153105 IRSKLHDTIDGNNLGTADGR---------IALDCSIRETRQGHYVISTTDFFFPLVDSPY 152953

Query: 92     MLGKIALANVVSDVFAVGATEIDQIKLIVTAPTEFTEQEREVVVPMVMQGFLEAAKACNA 151
              + G+I  ANV+SD++A G    D + +++ A  + T Q+R +   ++++GF +A      
Sbjct: 152952 LQGRIGAANVLSDLYAEGVQHCDFVLMLLAASLDMTPQDRTICTNLMVRGFRDACTEAET 152773

Query: 152    PVQIGSIAENPWCVIGGAASAVCHRSELIMPYNAQPGDALVLTKPLGTQLATNAYIWM-- 209
               +  G    NPW +IGG A++V  R E +    A  GD +VLTKP+GTQ+A N + W   
Sbjct: 152772 TITGGQTVLNPWAIIGGVATSVVTRDEYVSSDGACVGDVIVLTKPIGTQIAVNVHEWRKR 152593

Query: 210    -------GEQQSD-SWAQLRER-------FTVADIEQTYRIALESMSRLNKTGAELMKKY 254
                     G+   D +W ++ E+        TV++ E     A+ SMS+LN+ G++LM K+
Sbjct: 152592 HEKKAKNGDTTGDKNWNKILEQNKNGDEFLTVSESEIMMHAAVRSMSKLNRFGSKLMTKH 152413

Query: 255    GAHAATDVTGFGLYGHAENLASHQTADVDFHLDTLPIIKNVREIAETLGRGAKLLAGKAV 314
               AHA TDVTGFGL GHA+NL  +Q A V   L T P I N  +I + +    +L  G + 
Sbjct: 152412 NAHAGTDVTGFGLLGHAQNLMDNQIAKVGIELHTFPCIANTLKINDNI-MNFRLRDGYSA 152236

Query: 315    ETSGGLLICLPREAAAGFCEEYRRC--------------TKHEAWIVGHVEKGA 354
              ETSGGL+I +    A  +C E R                T    WI+G V + A
Sbjct: 152235 ETSGGLMISMTEADAIAYCAELREVETVAYNYNTSSDAGTDFGPWIIGRVVESA 152074


  Database: F.cylindrus/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,760,615
Number of Sequences: 271
Number of extensions: 342564
Number of successful extensions: 1259
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 52
length of query: 369
length of database: 26,846,802
effective HSP length: 108
effective length of query: 261
effective length of database: 26,817,534
effective search space: 6999376374
effective search space used: 6999376374
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)