TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...   246   3e-65

>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score =  246 bits (627), Expect = 3e-65
 Identities = 120/285 (42%), Positives = 178/285 (62%)
 Frame = +3

Query: 82      FFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLIVTAPTEFTEQEREVVVPMVMQG 141
               FF+PL+DDP+  GKIA ANV+SD+++ G  + D + +++   T+ T ++R+    +++QG
Sbjct: 5741658 FFFPLVDDPYFQGKIACANVLSDLYSFGIEDCDNMLMLLACSTDMTAEQRQWSSKLMIQG 5741837

Query: 142     FLEAAKACNAPVQIGSIAENPWCVIGGAASAVCHRSELIMPYNAQPGDALVLTKPLGTQL 201
               F + A    + V  G   +NPW ++GG A+++   +E I P NA PGD LVLTKPLGTQ+
Sbjct: 5741838 FNDQAICAGSKVSGGQTVKNPWPIVGGVATSILKTNEFIKPVNAVPGDVLVLTKPLGTQV 5742017

Query: 202     ATNAYIWMGEQQSDSWAQLRERFTVADIEQTYRIALESMSRLNKTGAELMKKYGAHAATD 261
                 N + W+ + +   W ++       + EQ +  A  SM+RLN+ GA LMKKY AHAATD
Sbjct: 5742018 CVNFHQWLSKPER--WEKINTITNAEECEQVFNYATLSMARLNRVGARLMKKYNAHAATD 5742191

Query: 262     VTGFGLYGHAENLASHQTADVDFHLDTLPIIKNVREIAETLGRGAKLLAGKAVETSGGLL 321
               VTGFG+ GH+ NLA +Q   + F + TLPIIK+++++ + L    KLL G + ETSGGLL
Sbjct: 5742192 VTGFGILGHSTNLAQNQLLPIRFEIHTLPIIKHMKKLEDHLNHPFKLLKGTSAETSGGLL 5742371

Query: 322     ICLPREAAAGFCEEYRRCTKHEAWIVGHVEKGARGVKMNPNLNIL 366
               I + RE A  FC+E     K  AWI+G V   +     + N +I+
Sbjct: 5742372 ISMSRENAEAFCKEIYEIEKQPAWIIGDVIDQSSNYDRSKNTSII 5742506



 Score = 35.4 bits (80), Expect = 0.073
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +1

Query: 14      RLTKFSTLRGUGSKVPQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGIGLDSSVIALKH- 72
               RLT F+ L+G G KVPQ  L  LL G+                 G GIG D S+   K  
Sbjct: 5741398 RLTDFTKLKG*GCKVPQAELLSLLDGI-----------------GEGIGYDCSISQTKFP 5741526

Query: 73      DLFLVQSVDFFYPLIDDPFMLGKI 96
               D+ ++Q+ D    L  +   L K+
Sbjct: 5741527 DIVMIQTTDVSLKLFKNKNKLIKL 5741598


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,595,821
Number of Sequences: 6
Number of extensions: 118378
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 35
length of query: 369
length of database: 11,314,357
effective HSP length: 102
effective length of query: 267
effective length of database: 11,313,745
effective search space: 3020769915
effective search space used: 3020769915
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)