TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847384|gb|ADNL01003219.1| Astrammina rara contig02818, who...    26   1.4  
gi|330849621|gb|ADNL01000982.1| Astrammina rara contig01144, who...    25   1.8  
gi|330850358|gb|ADNL01000245.1| Astrammina rara contig00256, who...    25   3.0  
gi|330850100|gb|ADNL01000503.1| Astrammina rara contig00562, who...    23   6.7  
gi|330847407|gb|ADNL01003196.1| Astrammina rara contig01437, who...    23   8.8  
gi|330850111|gb|ADNL01000492.1| Astrammina rara contig00551, who...    23   8.8  

>gi|330847384|gb|ADNL01003219.1| Astrammina rara contig02818, whole
            genome shotgun sequence
          Length = 2919

 Score = 25.8 bits (55), Expect = 1.4
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 295  VREIAETLGRGAKLLAGKAVETSGGLLICLPREAAAGFCEEYRRCTKHEAWIVGHVEKGA 354
            + EI E + +  K+  G+AVE    +++C        +C + R  T   A IV    +G 
Sbjct: 1126 LEEIIEGIPQRLKIKNGQAVEAWDKVILCSNFTPDKWYCGKQRMLTDILAKIV*KCLRGN 947

Query: 355  RG 356
            RG
Sbjct: 946  RG 941


>gi|330849621|gb|ADNL01000982.1| Astrammina rara contig01144, whole
           genome shotgun sequence
          Length = 688

 Score = 25.4 bits (54), Expect = 1.8
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -3

Query: 116 IKLIVTAPTEFTEQEREVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCV 165
           IK+I+     F       V+ +V   ++   K CN  +   S  +N W V
Sbjct: 638 IKIIIRC*YSFYINSLRYVITLVFYLYIIPCKFCNVKIDSWSCCKNNWYV 489


>gi|330850358|gb|ADNL01000245.1| Astrammina rara contig00256, whole
           genome shotgun sequence
          Length = 1857

 Score = 24.6 bits (52), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 142 FLEAAKACNAPVQIGSIAENPWCV 165
           FL    +C   VQ+GS  EN  CV
Sbjct: 300 FLWGHSSCVPGVQVGSFCENSLCV 371


>gi|330850100|gb|ADNL01000503.1| Astrammina rara contig00562, whole
           genome shotgun sequence
          Length = 506

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 187 PGDALVLTKPLGTQLATNAYIWMG 210
           PG  + + +P  TQL   ++ W+G
Sbjct: 208 PGLPIFVWRPHATQLGDGSHFWLG 279


>gi|330847407|gb|ADNL01003196.1| Astrammina rara contig01437, whole
            genome shotgun sequence
          Length = 1349

 Score = 23.1 bits (48), Expect = 8.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 46   GDKDGKGPNKEEGVGIGLDSSVIALKHDLFLVQSVDFFYPLIDDPF 91
            G K G    KE G+G    S     K   +LV ++ F   +I  PF
Sbjct: 1016 GKKKGCS*KKEVGMGKKTSSLKRNTKPKTYLVYTIAFI*AVITSPF 1153


>gi|330850111|gb|ADNL01000492.1| Astrammina rara contig00551, whole
            genome shotgun sequence
          Length = 3534

 Score = 23.1 bits (48), Expect = 8.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 269  GHAENLASHQTADVDFHLDTLPIIK 293
            GH+ NL+S  T    FH D + + +
Sbjct: 3172 GHSFNLSSTNTHTSSFHFDNVHLFR 3246


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,035
Number of Sequences: 3231
Number of extensions: 6010
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 369
length of database: 483,365
effective HSP length: 75
effective length of query: 294
effective length of database: 241,040
effective search space: 70865760
effective search space used: 70865760
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)