TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic cont...    29   6.3  
gi|325190206|emb|FR824298.1| Albugo laibachii Nc14, genomic cont...    28   8.3  
gi|325191895|emb|FR824412.1| Albugo laibachii Nc14, genomic cont...    28   8.3  

>gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic contig
             CONTIG_3_NC14_v4_366484_228
          Length = 366484

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 194   TKPLGTQLATNAYIWMGEQQSDS 216
             T PLGT+LA + Y WM  + S S
Sbjct: 38398 TSPLGTKLALSVYSWMNGKDSKS 38466


>gi|325190206|emb|FR824298.1| Albugo laibachii Nc14, genomic contig
             CONTIG_253_NC14_v4_37829_143
          Length = 37829

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +1

Query: 207   IWMGEQQSDSWAQLRERFTVADIEQTYR---IALESMSRLNKTGAELMKKYGAHAATDVT 263
             +W   ++  S   +    T+ +    +R   IA+ + SRLN   A      G  A  + T
Sbjct: 17815 LWRIRERERSKISIVTGLTIREKADAFRELLIAVAAPSRLNDLSALTFSMAGFFAFRNAT 17994

Query: 264   GFGLYGHAENL 274
             GF L    ENL
Sbjct: 17995 GFHLSSRTENL 18027


>gi|325191895|emb|FR824412.1| Albugo laibachii Nc14, genomic contig
             CONTIG_367_NC14_v4_23782_111
          Length = 23782

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +2

Query: 207   IWMGEQQSDSWAQLRERFTVADIEQTYR---IALESMSRLNKTGAELMKKYGAHAATDVT 263
             +W   ++  S   +    T+ +    +R   IA+ + SRLN   A      G  A  + T
Sbjct: 18611 LWRIRERERSKISIVTGLTIREKADAFRELLIAVAAPSRLNDLSALTFSMAGFFAFRNAT 18790

Query: 264   GFGLYGHAENL 274
             GF L    ENL
Sbjct: 18791 GFHLSSRTENL 18823


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,116,790
Number of Sequences: 3816
Number of extensions: 157479
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 318
length of query: 369
length of database: 10,913,379
effective HSP length: 102
effective length of query: 267
effective length of database: 10,524,147
effective search space: 2809947249
effective search space used: 2809947249
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)