TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value TcIL3000_10_v2.embl 37 0.035 T.congo.pschr.3. 30 4.3 T.congo.pschr.9 30 7.4 T.congo.pschr.6 30 7.4 T.congo.pschr.11 29 9.6 T.congo.pschr.8 29 9.6 >TcIL3000_10_v2.embl Length = 3612457 Score = 37.4 bits (85), Expect = 0.035 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Frame = +2 Query: 638 CSQMLSKEVDACVTGLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLK--LRKLK 695 C+ +++ E+D V +L+ Q RM ++ P++ K ++ GLREVL+ L+ ++ Sbjct: 3564650 CANIITDELDDLVFTVLQRQYALQSRMKKEKPLQFKGRKFYSTGLREVLRSLRAAATRVP 3564829 Query: 696 CIIISPNCE--------------KTQSKGGLDDTLHTII 720 ++I+ + E K+ GG+ D T + Sbjct: 3564830 AVLIASDIELDCPTTRHGGDATAKSHEHGGVSDAQDTFV 3564946 Score = 36.6 bits (83), Expect = 0.060 Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 12/248 (4%) Frame = +2 Query: 396 TVQEPPR--IEDAEEFPNLSVASER---RHRGQSPKLHSKQQ-TQNEFKTSGKK------ 443 T EPP ++ ++E+ + S +S R R QS + S Q TQ+ + S + Sbjct: 3470042 TNAEPPNENVDQSQEYTDYSESSARSSPRSSAQSSQQSSAQSPTQSSQRPSAQSPRQQSS 3470221 Query: 444 SQVPVQLDLGGMLAALEKXXXXXHASHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQ 503 +Q P Q ++ + S A+ ++ S P S SS++ +RSS Sbjct: 3470222 AQSPTQ---SSQQSSAQSPTQSSQQSSAQSPTQSSQQSSAQSPTQSSQRSSAQSSQRSST 3470392 Query: 504 MKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKXXXXXXXXXXXXSAVSLTVASD 563 + SSA + QR ++ + +S T + Sbjct: 3470393 QSPTQSSQQSSAQSPTQSSQRSSAQSSQRSS------------------------TQSPT 3470500 Query: 564 DSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPDS 623 S S S+Q PS +PT + +++S + +P +S + + + R + Q S Sbjct: 3470501 QSSQQSSAQSSQRPSTQSPT--QSSQQSSAQSPT---QSSQRSSAQSPRQQSSAQSPTQS 3470665 Query: 624 ATFPKIHS 631 + P S Sbjct: 3470666 SQRPSAQS 3470689 >T.congo.pschr.3. Length = 1451265 Score = 30.4 bits (67), Expect = 4.3 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +3 Query: 569 ESGASNQTPSQDNPTGPEKT--EESVSSTPVVEGESEEPAGTEFQRDPE 615 E A +Q P + NP E EE P +GE EE A E +PE Sbjct: 85830 EPSAQDQQPQEQNPDVYESAGEEEEKVGEPEAQGEPEEQAEPEEHAEPE 85976 >T.congo.pschr.9 Length = 2092392 Score = 29.6 bits (65), Expect = 7.4 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = -1 Query: 290 SPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSSN 349 SP+ EL+ TP I TVS + + + + L+ T + S ++SSN Sbjct: 551793 SPTSPHELNLTPSLRISMVTVSPKTVMSRTILANSCELRVTVDL*SISGAPIASVSISSN 551614 Query: 350 PSYNREKRVYPA 361 S+ RV+ A Sbjct: 551613 LSWYSHLRVFSA 551578 >T.congo.pschr.6 Length = 1233507 Score = 29.6 bits (65), Expect = 7.4 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 6/98 (6%) Frame = +1 Query: 78 PAQYVSSEIALHPFAYP------TYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHE 131 PA + + AL P P +Y +AQ+ + PT + + R P F T KP+ Sbjct: 389995 PAYHTYVQGALQPHTLPNASAADSYKATTAQAPPASPTNRP*HPTWRFTPSFTTTKPKFS 390174 Query: 132 HVCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAV 169 H P F + ++ + Q+ SR NA+ Sbjct: 390175 HHLPHTAYYSRGFPVRQTELWQCDRLQQVRSRAEQNAL 390288 >T.congo.pschr.11 Length = 4797796 Score = 29.3 bits (64), Expect = 9.6 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 1/105 (0%) Frame = +2 Query: 556 VSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPE 615 + LT +++ ++ SN T + + E P P E Sbjct: 2880752 IELTYFTNNKMFIDGVVSNDTSNLTDADTWESRYACTQPPPARSAAGHNPTSPAASPRNE 2880931 Query: 616 ACQPAPDSATFPKIH-SRRFRDYCSQMLSKEVDACVTGLLKELVR 659 A SAT P SRRFR+ CSQ L + + KE VR Sbjct: 2880932 AAS----SATGPTAKFSRRFRNNCSQRLPRRGEMNAQSAEKEYVR 2881054 >T.congo.pschr.8 Length = 2451971 Score = 29.3 bits (64), Expect = 9.6 Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 5/103 (4%) Frame = -2 Query: 25 VPKFAGLNVAWSESSETRVFPG--CAATYYPFVQEPP---AAEQKMYPEDMAFGAPTFPA 79 +PK G W E+S+ RVFP C PF P + + P ++ P P Sbjct: 1822663 MPKKRGTEFHWQENSDERVFPDETCKKAIVPFPFTKPIYYTSYTLVLPCSLSSTPPVLPL 1822484 Query: 80 QYVSSEIALHPFAYPTYTLESAQSVCSVPTLQYDYSQARCHPG 122 + A P T + Y RCH G Sbjct: 1822483 ALTALRRAARWLPPPHRTAVEGDGFSTR*GWSLGYRD*RCHSG 1822355 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,287,429 Number of Sequences: 11 Number of extensions: 335863 Number of successful extensions: 1594 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 1389 Number of HSP's gapped (non-prelim): 525 length of query: 858 length of database: 7,429,315 effective HSP length: 106 effective length of query: 752 effective length of database: 7,428,149 effective search space: 5585968048 effective search space used: 5585968048 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 64 (29.3 bits)