TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.92 of Sphaeroforma arctica JP610 45 0.001 supercont1.497 of Sphaeroforma arctica JP610 34 1.5 supercont1.289 of Sphaeroforma arctica JP610 34 2.0 supercont1.110 of Sphaeroforma arctica JP610 32 10.0 supercont1.65 of Sphaeroforma arctica JP610 32 10.0 >supercont1.92 of Sphaeroforma arctica JP610 Length = 160494 Score = 44.7 bits (104), Expect = 0.001 Identities = 21/49 (42%), Positives = 36/49 (73%) Frame = +2 Query: 491 DASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKII 539 +A+S ++GRR++ NPLDS+A + ++GK+R K K+PT+++KII Sbjct: 64013 EAASDKKGRRTATA----NPLDSTASVRRRGKERLTAKKKRPTAMRKII 64147 Score = 40.0 bits (92), Expect = 0.028 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Frame = +1 Query: 675 KRRLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIID-CACEQNI--PFV 731 K R G+REV K LK ++C+I+ + E + GL+D L T+ID CA + + +V Sbjct: 67708 KCRYAKGIREVQKALKTGVVRCVILPTDVENVRIDNGLNDQLRTLIDSCATKVGLWGEWV 67887 Query: 732 FALNRKALGRSLNK 745 R L R L + Sbjct: 67888 HLFIRLTLDRYLGR 67929 Score = 35.0 bits (79), Expect = 0.90 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = +3 Query: 726 QNIPFVFALNRKALGRSLNKAVPVSIVGIFSYDG---AQDQFHKMVE 769 Q I V+A+ RK+LG L PVS+V I Y G A HK +E Sbjct: 69000 QGIEVVYAMTRKSLGDCLIPKAPVSVVSIHDYSGTHVAYKALHKELE 69140 Score = 32.7 bits (73), Expect = 4.5 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +1 Query: 630 HSRRFRDYCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPVKAKTKRR 677 HS +FR YC ++KE+ A L +E+ + + D KA ++R Sbjct: 66697 HSAKFRGYCRNRVTKELLASTEQLTREISLMHHKKLKVDEAKANYRKR 66840 >supercont1.497 of Sphaeroforma arctica JP610 Length = 67224 Score = 34.3 bits (77), Expect = 1.5 Identities = 55/259 (21%), Positives = 82/259 (31%), Gaps = 12/259 (4%) Frame = -3 Query: 265 ADMVEGKMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSM 324 A + EG ++ TS T+S+ S T+ S P + +S + +A+E Sbjct: 53026 ARIAEGASTTDSASEQPATSARTSSTASATESASEQPATSARTSSTASTTDSASEQPAIS 52847 Query: 325 INLKKTTSSAD-AKNVSVTSEALSSNPSYNREKRVYPAPKAKASQGGELEQXXXXXXXXX 383 T S+ D A TS SS S PA A+ S Sbjct: 52846 TRTSSTASATDSASEQPATSARTSSTASTTDSASEQPAISARTSSTASAT---------- 52697 Query: 384 XXXXXXPSYEVLTVQEPPRIEDAEEFPNLSVASERRHRGQSPKLHSKQQTQNEFKTSGKK 443 + A E P S + S + + TS + Sbjct: 52696 --------------------DSASEQPTTSART-------SSTASTTDSASEQHATSART 52598 Query: 444 SQVPVQLDLGGMLAALEKXXXXXHASHAKP-----------SSRPVVFSVGAVPVLSKDA 492 S V + G +A+ + H +H P S+ P V AVP LS A Sbjct: 52597 SSTEVAVGTDGSTSAVTEPTTT-HVAHPAPVTLTETRGTVSSATPRTVVVPAVPALSSTA 52421 Query: 493 SSSERGRRSSQMKTPHNPL 511 SS+ S ++ N L Sbjct: 52420 SSTAAPAPSRDLRYIGNRL 52364 >supercont1.289 of Sphaeroforma arctica JP610 Length = 94523 Score = 33.9 bits (76), Expect = 2.0 Identities = 33/134 (24%), Positives = 58/134 (43%) Frame = -1 Query: 561 ASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPA 620 ASD SQD + +S++T + +P +K E P+ E E E + + PE+ Sbjct: 15044 ASDTSQDAPTNSSDETQKEKSPIIWDKDES--QKVPIPEPEEEASSSGK----PESTSET 14883 Query: 621 PDSATFPKIHSRRFRDYCSQMLSKEVDACVTGLLKELVRFQDRMYQKDPVKAKTKRRLVL 680 +S K+ + + L ++ A + G+ E V DRMY+ + + Sbjct: 14882 TESTRIGKLITE------NTDLKNQLAAFMEGMTVEHV---DRMYRSGKHTQHLREHVSP 14730 Query: 681 GLREVLKHLKLRKL 694 G+ E L+ R+L Sbjct: 14729 GITEALQK*TERRL 14688 >supercont1.110 of Sphaeroforma arctica JP610 Length = 153512 Score = 31.6 bits (70), Expect = 10.0 Identities = 39/139 (28%), Positives = 52/139 (37%), Gaps = 19/139 (13%) Frame = -1 Query: 58 PPAAEQKMYPEDMAFGA--PTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVPTLQYDYS 115 PP ++ P + A TFP Q ALHP P+Y ++A+ S P + S Sbjct: 148640 PPTIFKRPVPRSLKRVAVSSTFPTQTA----ALHP-GIPSY--QAAERRPSAPAMMLSTS 148482 Query: 116 QARCH------PGFR------TAKPRHEHVCPPPQEAKGVFKKKPSDERRACEEQKSSSR 163 H G R A P H P ++ KG+ P+ R C S S Sbjct: 148481 AGNFHRSLSSQSGMRKFSLDLAASPEHV----PLKDDKGIILMDPNAAERVCLGLGSGSD 148314 Query: 164 RAD-----NAVPCEARPAR 177 +AD N C A P R Sbjct: 148313 KADKLLGINNETCRALPVR 148257 >supercont1.65 of Sphaeroforma arctica JP610 Length = 179954 Score = 31.6 bits (70), Expect = 10.0 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 20/97 (20%) Frame = +3 Query: 58 PPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHPFA-YP-------------------TYT 97 PP EQ + P+ ++P + +SS I LH + +P T+T Sbjct: 130986 PPTPEQNLNPKS------SYPPKVMSSPITLHSLSVHPMHVGKCSVVHSLTP**NRLTHT 131147 Query: 98 LESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVC 134 L SAQS + Y Q+ ++ + H HVC Sbjct: 131148 LRSAQSSMLISKQNYPLPQSGMPVVYQIHRTIHRHVC 131258 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,894,386 Number of Sequences: 15618 Number of extensions: 1509509 Number of successful extensions: 5464 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 892 Number of HSP's successfully gapped in prelim test: 273 Number of HSP's that attempted gapping in prelim test: 3978 Number of HSP's gapped (non-prelim): 2569 length of query: 858 length of database: 40,529,447 effective HSP length: 118 effective length of query: 740 effective length of database: 38,686,523 effective search space: 28628027020 effective search space used: 28628027020 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 70 (31.6 bits)