TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) # Mus musculus # Complete (858 letters) Database: P.polycephalum/genome.fa 297,657 sequences; 319,018,052 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Contig12166 2663 7351 37 0.33 Contig43364 572 572 37 0.43 Contig14299 2881 4779 37 0.56 Contig16240 1653 1653 36 0.95 Contig13005 3016 8930 35 1.6 Contig208 31255 64701 35 1.6 Contig235213 250 250 33 4.7 Contig1849 12517 18645 33 6.2 Contig6700 6309 13924 33 8.1 >Contig12166 2663 7351 Length = 7351 Score = 37.4 bits (85), Expect = 0.33 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 20/169 (11%) Frame = +1 Query: 485 VPVLSKDASSSERGRRSSQMKTPH---NPLDSSAPLMKKGKQREIPKAKKPTSLKKIILK 541 VP + + E + + ++ H +P+ ++ +GK+REIPK KK + KKIILK Sbjct: 3151 VPQIPPSTTPQEPHKPPTLVRNQHREIHPVFAAVSTQTRGKEREIPKKKKVSVTKKIILK 3330 Query: 542 XXXXXXXXXXXXS--------AVSLTVASDDSQDVESGASNQ-TPSQDNPTGPEKTEESV 592 + L S +S +S + Q T SQ P ++ ++ Sbjct: 3331 ERQEKKENEHNSETNDLIPSPSTILQFTSSESTTYQSTTTQQYTTSQSTP-----SQSTI 3495 Query: 593 SSTPVVEGESEEPAGTE--------FQRDPEACQPAPDSATFPKIHSRR 633 S + + P+ ++DP P+ S + P HS + Sbjct: 3496 SHSTTAQPRQFAPSNPPQLLLPHFLSRKDPFPPSPSRHSFSSPSSHSHQ 3642 >Contig43364 572 572 Length = 572 Score = 37.0 bits (84), Expect = 0.43 Identities = 16/44 (36%), Positives = 27/44 (61%) Frame = -3 Query: 697 IIISPNCEKTQSKGGLDDTLHTIIDCACEQNIPFVFALNRKALG 740 +I + E+ S+GGL+D ++ +I EQ + FAL+RK +G Sbjct: 570 MIYKKDIEEITSEGGLNDQIYEVIKACQEQEVTLAFALSRKKIG 439 >Contig14299 2881 4779 Length = 4779 Score = 36.6 bits (83), Expect = 0.56 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T+S + T + T ++ SAAAT + + N TTS+A N + Sbjct: 2109 ATTSAAATTSAAATTNAAATTSAAATTSAAATTSAAATTSAAATTNAAATTSAAATTNAA 1930 Query: 341 VTSEALSS 348 T+ A ++ Sbjct: 1929 ATTSAAAT 1906 Score = 35.4 bits (80), Expect = 1.2 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T+S + T + T + ++ SAAAT + + + TTS+A + + Sbjct: 2430 ATTSAAATTSAAATTSAAATTSAAVTTSAAATTSAAATTSAAATTSAAATTSAAATTSAA 2251 Query: 341 VTSEALSSN 349 TS A +++ Sbjct: 2250 ATSAAATTS 2224 Score = 35.0 bits (79), Expect = 1.6 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T+S + T + T ++ SAAAT + + + TTS+A + Sbjct: 2412 ATTSAAATTSAAATTSAAVTTSAAATTSAAATTSAAATTSAAATTSAAATTSAAATSAAA 2233 Query: 341 VTSEALSSN 349 TS A ++N Sbjct: 2232 TTSAAATTN 2206 Score = 34.7 bits (78), Expect = 2.1 Identities = 20/71 (28%), Positives = 34/71 (47%) Frame = -1 Query: 278 TDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAK 337 T A TS A T+S + T + T ++ SAAAT + + + TTS+A Sbjct: 2262 TSAAATSAAATTSAAATTNAAATTSAAATTSAAATTSAAATTSAAATTSAAATTSAAATT 2083 Query: 338 NVSVTSEALSS 348 + + T+ A ++ Sbjct: 2082 SAAATTNAAAT 2050 Score = 34.7 bits (78), Expect = 2.1 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T+S + T + T ++ SAAAT + + N TTS+A + + Sbjct: 2199 ATTSAAATTSAAATTSAAATTSAAATTSAAATTSAAATTSAAATTNAAATTSAAATTSAA 2020 Query: 341 VTSEALSS 348 T+ A ++ Sbjct: 2019 ATTSAAAT 1996 Score = 34.7 bits (78), Expect = 2.1 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T+S + T + T ++ SAAAT N + + TTS+A + + Sbjct: 2181 ATTSAAATTSAAATTSAAATTSAAATTSAAATTSAAATTNAAATTSAAATTSAAATTSAA 2002 Query: 341 VTSEALSS 348 T+ A ++ Sbjct: 2001 ATTSAAAT 1978 Score = 34.7 bits (78), Expect = 2.1 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T+S + T + T ++ SAAAT + + + TTS+A N + Sbjct: 2145 ATTSAAATTSAAATTSAAATTSAAATTNAAATTSAAATTSAAATTSAAATTSAAATTNAA 1966 Query: 341 VTSEALSS 348 T+ A ++ Sbjct: 1965 ATTSAAAT 1942 Score = 34.7 bits (78), Expect = 2.1 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T+S + T + T ++ SAAAT N + + TTS+A + + Sbjct: 2055 ATTSAAATTSAAATTSAAATTSAAATTNAAATTSAAATTNAAATTSAAATTSAAATTSAA 1876 Query: 341 VTSEALSS 348 T+ A ++ Sbjct: 1875 ATTSAAAT 1852 Score = 34.3 bits (77), Expect = 2.8 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = -1 Query: 278 TDGAVTSNAT-TSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADA 336 T A T+NA T+S + T + T ++ SAAAT + + + TTS+A Sbjct: 1995 TSAAATTNAAATTSAAATTNAAATTSAAATTSAAATTSAAATTSAAATTSAAATTSAAAT 1816 Query: 337 KNVSVTSEALSSNPSYNREK 356 N + TS + + ++ + K Sbjct: 1815 TNAAATSANETKSDNHRKGK 1756 Score = 33.5 bits (75), Expect = 4.7 Identities = 19/68 (27%), Positives = 33/68 (48%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T++ + T + T ++ SAAAT + + + TTS+A N + Sbjct: 2235 ATTSAAATTNAAATTSAAATTSAAATTSAAATTSAAATTSAAATTSAAATTSAAATTNAA 2056 Query: 341 VTSEALSS 348 T+ A ++ Sbjct: 2055 ATTSAAAT 2032 Score = 32.7 bits (73), Expect = 8.1 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = -1 Query: 278 TDGAVTSNA-TTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADA 336 T A T+NA T+S + T + T ++ +AAAT + + N TTS+A Sbjct: 2085 TSAAATTNAAATTSAAATTSAAATTSAAATTSAAATTNAAATTSAAATTNAAATTSAAAT 1906 Query: 337 KNVSVTSEALSS 348 + + T+ A ++ Sbjct: 1905 TSAAATTSAAAT 1870 Score = 32.7 bits (73), Expect = 8.1 Identities = 19/68 (27%), Positives = 33/68 (48%) Frame = -1 Query: 281 AVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSAAATENVTSMINLKKTTSSADAKNVS 340 A TS A T+S + T + T ++ SAAAT + + + TTS+A + + Sbjct: 2019 ATTSAAATTSAAATTNAAATTSAAATTNAAATTSAAATTSAAATTSAAATTSAAATTSAA 1840 Query: 341 VTSEALSS 348 T+ A ++ Sbjct: 1839 ATTSAAAT 1816 >Contig16240 1653 1653 Length = 1653 Score = 35.8 bits (81), Expect = 0.95 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = -2 Query: 565 SQDVESGASNQTPSQDNP--TGPEKTEESVSSTPVVEGESEEPAGTEFQRDPEACQPAPD 622 S+ +S +S +P+ +P + P K+ + S +P + P T P P P Sbjct: 1160 SKSKKSESSTSSPANSSPPKSSPSKSRSTKSPSPPPKSAKSPPLSTPLPDRPSKLSPLPT 981 Query: 623 SATFPKIHSRRFRDYCS 639 + FP I S + Y S Sbjct: 980 PSPFPSISSSKKSTYTS 930 >Contig13005 3016 8930 Length = 8930 Score = 35.0 bits (79), Expect = 1.6 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 4/97 (4%) Frame = -1 Query: 85 EIALHPFAYPTYTLESAQSVCSVPTLQY---DYSQARCHPGFRTAKPRHEHVCPPPQEAK 141 +I + P + TY S+ S T + +SQ HP + P H PP + A+ Sbjct: 8597 KIRIRPTSLRTYPAAQPSSLASPTTSRSPL*SHSQQPPHPPHSSPSPPRRHPRPPARTAR 8418 Query: 142 GVFKKKPSDERRACEEQKSSS-RRADNAVPCEARPAR 177 + R C Q+ RAD A ARPAR Sbjct: 8417 ACCSRAQRAPRTGCGSQRPRDLLRADRA---HARPAR 8316 >Contig208 31255 64701 Length = 64701 Score = 35.0 bits (79), Expect = 1.6 Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 15/163 (9%) Frame = -1 Query: 201 RKSRILAKSASTSKPEFEFSRLDFPELQSPKNSNMPETQKPPRWGPLGPAASNMPLLG-- 258 +KS S S P F F SP +P P G + S+ + G Sbjct: 28896 QKSTFAPASPFNSTPPFSFG--------SPSAKPLPAQASFPAKPSSGSSTSSTSIFGAS 28741 Query: 259 ----DVGKPVADMVEGKMVKSDHTDGAVTSNATTSSPSCTQEL--------SWTPMGY-I 305 P A + + + + +S+ +TSS S + + S++ G+ + Sbjct: 28740 PSTFSFSSPSAALPGASGTSAASSSSSASSSLSTSSGSSSSSIFGATPSTFSFSSPGFSL 28561 Query: 306 VRQTVSSDSAAATENVTSMINLKKTTSSADAKNVSVTSEALSS 348 T+S+ AAAT + T+ TSSA A + S +SE+ SS Sbjct: 28560 TPPTLSAKPAAATPSTTT-----PATSSASASSASTSSESTSS 28447 >Contig235213 250 250 Length = 250 Score = 33.5 bits (75), Expect = 4.7 Identities = 18/69 (26%), Positives = 32/69 (46%) Frame = +3 Query: 469 SHAKPSSRPVVFSVGAVPVLSKDASSSERGRRSSQMKTPHNPLDSSAPLMKKGKQREIPK 528 SHA RPV++ V + +L+K + + ++ Q KT N + K KQ + + Sbjct: 3 SHA*YVGRPVIYYVKMI*ILNKTKQNKTKQNKTKQNKTKQNKTKQNKTKQNKTKQNKTKQ 182 Query: 529 AKKPTSLKK 537 +K K+ Sbjct: 183 KRKQKQKKR 209 >Contig1849 12517 18645 Length = 18645 Score = 33.1 bits (74), Expect = 6.2 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 2/105 (1%) Frame = +2 Query: 75 PTFPAQYVSSEIALHPFAYPTYTLESAQSVCSVP--TLQYDYSQARCHPGFRTAKPRHEH 132 PTFPAQY+S+ +L +P A S +P L S R K + + Sbjct: 10232 PTFPAQYISAVKSLLSLYFPNPFQSYAISATQIPPNLLYLHLSHKR--------KDSNRN 10387 Query: 133 VCPPPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPAR 177 VC P +K+ D R +E + DN V C R R Sbjct: 10388 VCTPE-------RKELLDCYRNSDELLKCKPKVDNFVECAKRATR 10501 >Contig6700 6309 13924 Length = 13924 Score = 32.7 bits (73), Expect = 8.1 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 17/92 (18%) Frame = -2 Query: 89 HPFAYPTYTLESAQSVCSVPTLQYDYSQAR--CHPGFRTAK-------PRHEHVCPPPQE 139 HPF Y + S+ + + L Y YSQ R H G + K E VCP + Sbjct: 345 HPFRYVGFLFHSSYFLLYLSLLLYLYSQCRIIVHQGTKPEKHYQVATADSMEEVCPIEKR 166 Query: 140 A--------KGVFKKKPSDERRACEEQKSSSR 163 KG +K+ ERR EE++ R Sbjct: 165 TKWKSIKPEKGRGEKREEKERRGREERREERR 70 Database: P.polycephalum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 319,018,052 Number of sequences in database: 297,657 Lambda K H 0.311 0.126 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,496,716 Number of Sequences: 297657 Number of extensions: 4230279 Number of successful extensions: 19616 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 17334 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 19323 length of query: 858 length of database: 106,339,350 effective HSP length: 122 effective length of query: 736 effective length of database: 70,025,196 effective search space: 51538544256 effective search space used: 51538544256 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 72 (32.3 bits)